Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 13897677

Figure

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Details

GI 13897677 see NCBI Nucleotide
Accession AF255137
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma sp. JMCR.142 
Sequence ATGAAATCTTCAATCCATAAGCTTCTTAATTGGAGTTTGTAGTCTTGGACTTGGAGGCTTGTCGGTCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTATAGAGACAACTTTATGACCTCTGA
Structure ....((..(((((.(.(((((((((......))))))))).)..))))).))(((((...(((((.(((....)))))))).)))))..........((((((..(((((((...((((.(((.(((((((((...))).)))))))))))).)..))).)...))))))))).......(((((.(...)))))).................
Method 2: Homology modeled
Energy -43.9 kcal/mol
Model 55820070
Alignment
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTA--TGGGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((...--.)))))))))))).))))).))(((((...(((((..(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAATCTTCAATCCATAAGCTTCTTAATTGGAGTTTGTAGTCTTGGACTTGGAGGCTTGTCGGT-CCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTATAGAGACAAC-TTTATGACCTCTGA
       ....((..(((((.(.(((((((((......))))))))).)..))))).))(((((...(((((.-(((....)))))))).)))))..........((((((..(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))...-..............
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _________________(__(_(__________)_)__)________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 89.474
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Agaricales see NCBI Taxonomy
Hygrophoraceae see NCBI Taxonomy
Hygrophorus see NCBI Taxonomy
Hygrophorus cossus see NCBI Taxonomy
33391891 (Method 3) see NCBI Nucleotide
Hygrophorus quercetorum see NCBI Taxonomy
42821946 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 371
End: 583

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