Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 13897730

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 13897730 see NCBI Nucleotide
Accession AF255190
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma sp. MUCL27886 
Sequence ATGAAACCTTCAACTTACAAGCTCTTTGCGGGGTTTGTAGGCTTGGACTTGGAGGGCTTGTCGGCCTTGAATGGTCGGCTCCTCTTAAATGCATTAGCTTGATTTCCTTGCGGATCGGCTGTCGGTGTGATAATGTCTACTCCGCGACCGTGAAGCGTCTGGCAAGCTTCTAACCGTCTCGTCACAGAGACAGCTTTATGACCTCTGA
Structure ....((..(((((((((((((((((....)))))))))))).))))).))(((.((...((((((((...).))))))).)))))..........((((((...((..(((...((((.((.(((.(((((...))).)).))))).))).)..)))...)))))))).......(((((.(...)))))).................
Method 2: Homology modeled
Energy -42.3 kcal/mol
Model 55820070
Alignment 
Sbjct: ATGAAATMTTCAATCTACAAACTTCTTATGGGGTTTGTAGGCTTGGACTTGGA-GGCTTGTCGGTCCCTTTACAGGTCGGCTCCTCTTAAATGCATTAGCTTGG-TTCCTTGCGGATCGGCTTGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTGTTTGGGCGAGCTTCTAACCGTCTCGTTACAGAGACAACTTTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((-((...(((((..(((....)))))))).)))))..........((((((.-.(((.(((....(((.(((.(((((((((...))).))))))))))))....))).....))))))))).......(((((......)))))..................
Query: ATGAAACCTTCAACTTACAAGCTCTTTGCGGGGTTTGTAGGCTTGGACTTGGAGGGCTTGTCGG--CCTTGAATGGTCGGCTCCTCTTAAATGCATTAGCTTGATTTCCTTGCGGATCGGC-TGTCGGTGTGATAATGTCTACTCCGCGACCGTGAAGCGTCT---GGCAAGCTTCTAACCGTCTCGTCACAGAGACAGC-TTTATGACCTCTGA
       ....((..(((((((((((((((((....)))))))))))).))))).))(((.((...(((((--((......))))))).)))))..........((((((...((..(((....(((.-((.(((.(((((...))).)).))))).)))....)))...---)))))))).......(((((......)))))...-..............
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________((_____(__((____))__)_____))____________________________________________________________(___________________________________________________________________)_____________________________________________
Transferred percentage of helices I: 100
II: 92.308
III: 88.889
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma australe see NCBI Taxonomy
63098760 (Method 3) see NCBI Nucleotide
Ganoderma sp. TAI-05 see NCBI Taxonomy
13897734 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB87/267 see NCBI Taxonomy
13897692 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB96/361 see NCBI Taxonomy
13897694 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB96/408 see NCBI Taxonomy
13897696 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB96/346 see NCBI Taxonomy
13897697 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB96/380 see NCBI Taxonomy
13897698 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB91/145 see NCBI Taxonomy
13897705 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB91/144 see NCBI Taxonomy
13897707 (Method 3) see NCBI Nucleotide
Ganoderma sp. PKB95/259 see NCBI Taxonomy
13897711 (Method 3) see NCBI Nucleotide
Ganoderma sp. IJFM-A130 see NCBI Taxonomy
13897713 (Method 3) see NCBI Nucleotide
Ganoderma sp. IJFM-A414 see NCBI Taxonomy
13897715 (Method 3) see NCBI Nucleotide
Ganoderma sp. BAFC2552 see NCBI Taxonomy
13897719 (Method 3) see NCBI Nucleotide
Ganoderma sp. BAFC2571 see NCBI Taxonomy
13897720 (Method 3) see NCBI Nucleotide
Ganoderma sp. BAFC2563 see NCBI Taxonomy
13897722 (Method 3) see NCBI Nucleotide
Ganoderma sp. HMAS60686 see NCBI Taxonomy
13897732 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 365
End: 572

If you use the database please cite.