Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 8101482

Figure

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Details

GI 8101482 see NCBI Nucleotide
Accession AF133778
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; environmental samples ; uncultured fungus from Acaulospora colossica spore IVB.17 
Sequence ATGAACACCTCACTACTATAACTTTTTTGTTGTAATAGTGGACTTGGGATGCGCTGGTGTCAATCAGCCCTTCTAAAATGGAGTTCTTGCACTGTTGATTTGTTTTAACAGCATGTTGGCCTAATAAGTTTCGGCAGTAATGTTGAAATCACCGGCTTTTTTTGCTTAGAATCTGACAGTCTTGATATACAGAATTTTTGAGGTGACTTGTCTCCTCTTCAAATTTTGA
Structure .........((((((.((((((......)))))).))))))..((((((.(.((((((....))))))).))))))...((((((((((((((((((....((((((..((((.(..((((...(..(((((((((....))))))))).)..)))))....)))))))))).)))))))...).))...)))))))).((((.((....)).))))............
Method 2: Homology modeled
Energy -49.8 kcal/mol
Model 170516515
Alignment 
Sbjct: ----ACACCTCACTACTATAAC-TTTTTGTTGTAATAGTGGACTTGGAATGCGCTGGTGTCAATCAGCCCTTCTAAAATGGAGTTCTTGCACTGTTGATTTGTTTTAACAGCATGTTGGCCTAATAAGTTTCGGCAGTAATGCTGAAATC-CTGGCTTTTTTTGCTTAGAATCTGACAGTCTTGATATACAGAATTTTTGAGGAGACTTGTCTCCTCTTCAA-------
       ----.....((((((.((((((-.....)))))).))))))..((((((...((((((....))))))..))))))...((((((((...(((((((....((((((..((((....((((......(((((((((....))))))))).-..)))).....)))))))))).)))))))..........)))))))).(((((((....))))))).....-------
Query: ATGAACACCTCACTACTATAACTTTTTTGTTGTAATAGTGGACTTGGGATGCGCTGGTGTCAATCAGCCCTTCTAAAATGGAGTTCTTGCACTGTTGATTTGTTTTAACAGCATGTTGGCCTAATAAGTTTCGGCAGTAATGTTGAAATCACCGGCTTTTTTTGCTTAGAATCTGACAGTCTTGATATACAGAATTTTTGAGGTGACTTGTCTCCTCTTCAAATTTTGA
       .........((((((.((((((......)))))).))))))..((((((...((((((....))))))..))))))...((((((((...(((((((....((((((..((((....((((......(((((((((....)))))))))....)))).....)))))))))).)))))))..........)))))))).((((.((....)).))))............
 CBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _______________________________________________(_______________________)_____________________________________________________________(________)______________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 85.714
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus from Acaulospora colossica spore IVB.5 see NCBI Taxonomy
8101481 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 356
End: 584

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