Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 8101483

Figure

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Details

GI 8101483 see NCBI Nucleotide
Accession AF133779
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; environmental samples ; uncultured ascomycete from Acaulospora colossica spore IVB.3-2 
Sequence ATTTAACTCTTCAAGCTTTGCTTGGTGTTGGGTATTGTTCGCCTTATGAACTTGCCTTGAATAAATTGGCAGCCAACCATTGGGTGTTGGCGCGCAGCACATTTTGCGTTCTTGACCTTAGTAGCTGGCGTCCAGAAAGCTTATTTCAACGTTT
Structure ..........((((((...))))))..(((((((..(((..(.....))))).))).)))......(((.(((((.(.((((((..((((.((((((.(...)))))))))..))))).))).).)))).))))..((((.(.(...)).))))
Method 2: Homology modeled
Energy -1.9 kcal/mol
Model 186695933
Alignment 
Sbjct: ATTTGTACCCTCAAGCAATGCTTGGTGTTGGGTGATTGTCTGCGCACTTGGGCAGACTCGCCTCAAATTCATTGGCAGCTGGTATTCTGGTTTTAA-GCGTAGCACA-ATTACGTTTTTCTCTAGTAGAGCCCGCGTCCACAAAGCACATCATCACGTTTGA
       ..........((((((...))))))..((((((((..((((((........))))))))))).)))......(((..((.(((.((((((....((-((((((....-.))))))))....)))).)).))).))..)))..((((..........))))..
Query: ATTTAACTCTTCAAGCTTTGCTTGGTGTTGGGT-ATTGTTCGC---CTTATG--AACTTGCCTTGAATAAATTGGCAGCCAACCATTGGGTGTTGGCGCGCAGCACATTTTGCGTTCTTGACCTTAGTAGCTGGCGTCCAGAAAGCTTATTTCAACGTTT--
       ..........((((((...))))))..((((((-(..(((..(---.....)--)))).))).)))......(((..((.(.(.((.(((....((.((((((......))))))))....)))..)).).).))..)))..((((..........))))--
 CBCs: _______________________________________(______________)_________________________(___(__(______(_____(__________)____)______)___)___)______________________________
HCBCs: ____________________________((_________________________________))_________________(__(__(______(___________________)______)___)__)________________________________
Transferred percentage of helices I: 100
II: 78.571
III: 90.909
IV: 100
Annotation Process: HMM annotation
Start: 318
End: 471

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