Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 8101495

Figure

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Details

GI 8101495 see NCBI Nucleotide
Accession AF133791
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; environmental samples ; uncultured fungus from Acaulospora colossica spore IVB.3-1 
Sequence ATTTAAATCATAAACCCCTGTGGGTTTGTCATGGGCCTCGCCTGCCTGGCGTTGCCTCAAAGTCATTCGGTCTAAAAAGCGGACGAGATCCTTTAGGACTGACCGTTTGGTGACCTTTAAACCTCTGACTTGA
Structure .........((((((((....))))))))...((((..((((.....))))..))))...........((((...(((((((.(..(.(((....))).)).))))))..))))).((..(....))).....
Method 2: Homology modeled
Energy -21.7 kcal/mol
Model 197112162
Alignment 
Sbjct: ATTGAAACCAATAAATCTCTTAAGAGATTTGTGTTGGGCTCCGCAT-CCGTGCGTTGCCTGGAAGCCAT--GGTCTAACCTGCGGACGAGCTCCTCTCGGACCTGCCGTAGCGAGACTTTC--ATCTCTGAATTT-
       ..........(((((((((....)))))))))...((((..((((.-...))))..)))).........--(((((...((((((...((.(((....))).)).))))))..))))).((--(....)))....-
Query: ATTTAAATC-ATAAACCCCT--GTGGGTTTGTCATGGGCCTCGCCTGCCTGGCGTTGCCTCAAAGTCATTCGGTCTAAAAAGCGGACGAGATCCTTTAGGACTGACCGTTTGGTGACCTTTAAACCTCTGACTTGA
       .........-((((((((..--..))))))))...((((..((((.....))))..))))...........((((....((((((....(.(((....))).)..))))))...)))).((..(....))).....
 CBCs: _______________(_(______)_)_________________(_____)____________________________((____________________________))_________________________
HCBCs: _______________________________________________________________________(_________________(____________)______________)__(________)______
Transferred percentage of helices I: 88.889
II: 100
III: 87.5
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured ectomycorrhizal fungus see NCBI Taxonomy
78191222 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 282
End: 414

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