Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
   
Predict
   
Model
   
Annotate
   
Motif
   
Tools
 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications

ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 10637998

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 10637998 see NCBI Nucleotide
Accession AJ272400
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetidae Boletales Suillineae Suillaceae Suillus Suillus aeruginascens 
Sequence AGTAAATTCTCAACCCCTCTCGATTTGCTTCGATAGGGTGCTTGGATACTGGGGGCTGCCGGAGACCTGGACGAAAGTCTAGGACTCGGGCTCTCCTTAAATGAATCGGCTTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCCGAAGTGCATGAATGAATGGTTCCGTGCCTCTAATGCGTCGACGCCTTTTTGGCGTCTTCCTTATTGACTTTTGA
Structure .........(((((((((.((((......)))).)))).).)))).....(((((..(((.(((.(((((((....))))))).))).))).)))))..........(((..((((..((((((((..(((((((..(..(((....((((((((....)))).)))).))))..)))))))..)))).)))))))))))..(((((.(..((((((.....)))))))....)))))........
Method 2: Homology modeled
Energy -81.7 kcal/mol
Model 176063
Alignment
Sbjct: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGAAAGGGTGCTTGGATAGTGGGGGCTGCCGGAGATCTGGACTTCTCGTCTAGGACTCGGGCTCTCCTGAAATGAATGGGCCTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCTGAAGTGCATGAATGAATGGTCCCGTGCCTCTAATGTGTCGATGCC-TTCTGGCGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((.....))))))).))).))).))))).........((((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))).(((((....((((((-....)))))).....)))))........
Query: AGTAAATTCTCAACCCCTCTCGATTTGCTTCGATAGGGTGCTTGGATACTGGGGGCTGCCGGAGACCTGGACGA-AAGTCTAGGACTCGGGCTCTCCTTAAATGAATCGGCTTGCGGTCGACTTTCGACTATGCATGACAAGGCTTTTGGCGTGATAATGATCGCCGCTCGCCGAAGTGCATGAATGAATGGTTCCGTGCCTCTAATGCGTCGACGCCTTTTTGGCGTCTTCCTTATTGACTTTTGA
       .........((((.((((.((((......)))).))))...)))).....(((((..(((.(((.(((((((..-..))))))).))).))).)))))..........(((..((((..((((((((..(((((((.....(((....((((((((....)))).)))).)))...)))))))..)))).)))))))))))..(((((....((((((.....)))))).....)))))........
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _________________________________________________________________(_________________)___________________________________(_____________________(______________________________)____________________)____________________(___________)____________________
Transferred percentage of helices I: 100
II: 100
III: 97.059
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured ectomycorrhizal fungus see NCBI Taxonomy
83423498 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Suillineae see NCBI Taxonomy
Suillaceae see NCBI Taxonomy
Suillus see NCBI Taxonomy
Suillus pictus see NCBI Taxonomy
118442741 (Method 3) see NCBI Nucleotide
118442742 (Method 3) see NCBI Nucleotide
118442743 (Method 3) see NCBI Nucleotide
118442744 (Method 3) see NCBI Nucleotide
118442745 (Method 3) see NCBI Nucleotide
118442746 (Method 3) see NCBI Nucleotide
118442747 (Method 3) see NCBI Nucleotide
118442748 (Method 3) see NCBI Nucleotide
118442756 (Method 3) see NCBI Nucleotide
118442757 (Method 3) see NCBI Nucleotide
118442758 (Method 3) see NCBI Nucleotide
118442759 (Method 3) see NCBI Nucleotide
118442760 (Method 3) see NCBI Nucleotide
118442761 (Method 3) see NCBI Nucleotide
118442762 (Method 3) see NCBI Nucleotide
118442763 (Method 3) see NCBI Nucleotide
118442765 (Method 3) see NCBI Nucleotide
118442768 (Method 3) see NCBI Nucleotide
118442769 (Method 3) see NCBI Nucleotide
118442770 (Method 3) see NCBI Nucleotide
118442771 (Method 3) see NCBI Nucleotide
118442772 (Method 3) see NCBI Nucleotide
118442773 (Method 3) see NCBI Nucleotide
118442774 (Method 3) see NCBI Nucleotide
118442775 (Method 3) see NCBI Nucleotide
118442776 (Method 3) see NCBI Nucleotide
118442777 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 399
End: 644

If you use the database please cite.