Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 1405845

Figure

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Details

GI 1405845 see NCBI Nucleotide
Accession Z74730
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Ascomycota saccharomyceta Pezizomycotina leotiomyceta sordariomyceta Sordariomycetes Hypocreomycetidae Hypocreomycetidae incertae sedis Glomerellaceae Glomerella Glomerella cingulata 
Sequence AACCCTCAAGCTCTGCTTGGTGTTGGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTTTTCGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTCCAAAGG
Structure (((..((((((...)))))).)))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))(.((((........)))).).....
Method 2: Homology modeled
Energy -43.9 kcal/mol
Model 223016911
Alignment
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAA-CCCCCAATTTTACTAAGGT
       ....((((..((((((...)))))).))))((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))((((((-.......))))))......
Query: -----AACCCTCAAGCTCTGCTTGGTGTT-GGGCCCTACAGCTGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCCCGGAGCCTCCTTTGCGTAGTAACTTTTCGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAAACCCCCCAATTTTCCAAAGG-
       -----(((..((((((...)))))).)))-((((.(((((.....)))))))))...........(((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))(.((((........)))).).....-
 CBCs: _______________________________________(_____)_____________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)__________________________________________
Transferred percentage of helices I: 90
II: 100
III: 100
IV: 83.333
Annotation Process: Genbank annotation
Start: 1
End: 156

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