Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 14716938

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 14716938 see NCBI Nucleotide
Accession AJ313489
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Crotalaria ; Crotalaria comosa 
Sequence GCCCATCGTTGCCCCATTGCTTTGGCCTCGTGCTAGGCACCGAGCTGGGCGAATGCTGGCTTCCCGCGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGGCGCCGTGACGGATGGTGGTTGTTGAGTTAAAAGAAAGCTCGAGACCCATCGTGGGTGTCATGCGCACCGGCATTGCGACTCTGTGATCCATGAGCGTCTCTTGGTCGCCCAAGACGGGACCTCAGGTC
Structure ((((((((.((((....(((..((....)).)).))))).)))..)))))...((((.((.....)).))))((((.(((.((...((((.....((((((.((((((..((...((((.(((((.((((((((..((((((((.......)))))))..))))))))...)))))))))).))..))))))))))).))))))).))))))).((((((....))))))..............
Method 2: Homology modeled
Energy -67.7 kcal/mol
Model 14717021
Alignment 
Sbjct: GCCCATCGTTGCCCCGTTGCTTTGGCCTCGTGCTAGGCACCGAGCTGGGCGAATGCTGGCTTCCCGCGAGCAACGCCTCACGGTTGGTTGAAAATTGAGTCCGTGGTGGAGGGCGGCGCCGTGACGGGATGGTGGTTGTTGAGTTAAAAGAAAGCTCGAGACCCATCGTGGGTGTCATGCGCACCGGCATTGCGACTCTGTGATCCATGAGCGTCTCTTGGTCGCCCAAGACGG-----------
       ((((((((.((((.....((..((....)).))..)))).)))..)))))...((((.((.....)).))))((((.(((.((...((((......(((((.((((((..((...((((.((((((..(((((((...(((((((.......)))))))...)))))))...)))))))))).))..)))))))))))..)))))).))))))).((((((....))))))...-----------
Query: GCCCATCGTTGCCCCATTGCTTTGGCCTCGTGCTAGGCACCGAGCTGGGCGAATGCTGGCTTCCCGCGAGCAACGCCTCACGGTTGGTTGAAAACTGAGTCCGTGGTGGAGGGCGGCGCCGTGAC-GGATGGTGGTTGTTGAGTTAAAAGAAAGCTCGAGACCCATCGTGGGTGTCATGCGCACCGGCATTGCGACTCTGTGATCCATGAGCGTCTCTTGGTCGCCCAAGACGGGACCTCAGGTC
       ((((((((.((((.....((..((....)).))..)))).)))..)))))...((((.((.....)).))))((((.(((.((...((((......(((((.((((((..((...((((.(((((-..(((((((...(((((((.......)))))))...)))))))....))))))))).))..)))))))))))..)))))).))))))).((((((....))))))..............
 CBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 98
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Crotalarieae see NCBI Taxonomy
Crotalaria see NCBI Taxonomy
Crotalaria lanceolata see NCBI Taxonomy
169260578 (Method 3) see NCBI Nucleotide
Crotalaria trichotoma see NCBI Taxonomy
289066280 (Method 3) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 422
End: 665

If you use the database please cite.