Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 14716939

Figure

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Details

GI 14716939 see NCBI Nucleotide
Accession AJ313490
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Crotalaria ; Crotalaria cylindrocarpa 
Sequence GCCCATCGTTGCCCCAGTGCCTTGGCCTCGTGCTAGGCACCGAGCTGGGCGAATGCTGGCTTCCCGCGAGCAACGCCTCACGGTTGGTTGAAAACAGAGTCCGTGGTGGAGGGCGCCGTGACGGATGGTGGTTGAGTAAAACAAAGCTCGAGACCCATCGTGGGTGTCACCCGCACCGGCATTGCGACTCTATGATCCATGAGCGTCTGTTGGTCGCCCAAGACGG
Structure (((.((.(((((((.(((((((.(((.....))))))))).....))))))).)).))))...(((.((((...).))).))).(((.....((.((((((.((((((..(((((..((((((.(((((((((((((........))))))...)))))))...)))))).))).))..)))))))))))).)..))))....(((((.(.((...)).)))))).
Method 2: Homology modeled
Energy -60.2 kcal/mol
Model 14717023
Alignment 
Sbjct: GCCCATCGTTGCCCCAGTGCCTTGGCCTCGTGCTAGGCACCGAGCTGGGTGAATGTTGGCTTCCCGCGAGCAACGCCTCACGGTTGGTTGAAAATTGAGTCCGTGGTGGAGGGCGCGCCGTGACGGATGGTGGTTGAGTAAAAGAAAGCTCGAGACCCATCGTGGGTGTCACCCGCACCGGCATTGCGACTCTATGATCCATGAGCGTCTCTTGGTCGCCAAAGACGT
       (((.((..((((((..((((((.(((.....)))))))))......))))))..)).)))...(((.(((......))).))).(((......((.(((((.((((((..((..(((..((((((.(((((((((((((........))))))...)))))))...)))))).))).))..))))))))))).))...)))...((((((.((((...))))))))))
Query: GCCCATCGTTGCCCCAGTGCCTTGGCCTCGTGCTAGGCACCGAGCTGGGCGAATGCTGGCTTCCCGCGAGCAACGCCTCACGGTTGGTTGAAAACAGAGTCCGTGGTGGAGG--GCGCCGTGACGGATGGTGGTTGAGTAAAACAAAGCTCGAGACCCATCGTGGGTGTCACCCGCACCGGCATTGCGACTCTATGATCCATGAGCGTCTGTTGGTCGCCCAAGACGG
       (((..(..((((((..((((((.(((.....)))))))))......))))))..)..)))...(((.(((......))).))).(((......(..(((((.((((((..((--(((..((((((.(((((((((((((........))))))...)))))))...)))))).))).))..)))))))))))..)...)))....(((((.(.((...)).)))))).
 CBCs: ____________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: __________(______________________________________)__________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 95
II: 100
III: 97.5
IV: 80
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Crotalarieae see NCBI Taxonomy
Crotalaria see NCBI Taxonomy
Crotalaria distans see NCBI Taxonomy
169260575 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 421
End: 646

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