Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 148612679

Figure

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Details

GI 148612679 see NCBI Nucleotide
Accession EF417811
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; environmental samples ; uncultured Clavulina 
Sequence GTGAAATTTCTCAAGCTTTGGATGGCTTTTTGTCTGTCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTTGTTGGGACGGCTGGCCTTAAAAGCATTAGCTGATCCTTGTGTGCCACTGGTTCTACTCAGCGTGATAACAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGTTCTCATTTGGGTTGCTTCTAAACTTGGTTTTGCAGATTCTTGAATCTGTGTTCCACTTTTCAGCTTTGA
Structure ..........(((((((..(((((((.....))).))))..))).)))).....((.(...((..((((((.....)))))))).).))...........(((((....((((.((..(.((.((...(((((((((((....))).)..))))))))))))....)))..))).)))))(((....)))..........................................................
Method 2: Homology modeled
Energy -20 kcal/mol
Model 61228964
Alignment 
Sbjct: ATGGAA-TTCTCAACTTATAAAT--CCTTGTG---ATCTATAAGCTTGGACTTGGAGGCTTGC--TGGCCCTCGTTGGGTCGGCTCCTCTTGAATGCATTAGCTCGATTCCGTACG-GATCGGCT---CTCAGTGTGATGATTGTCTA--CGCTGTGACCGTGAAGTGTTTTGGCGAGCTTCTAACCGTCCATTAGGACAACTTTTTAACATCTGA----------------------------------------
       ......-...((((((((((.((--(.....)---)).)))))).))))....(((((...((--((((((.....)))))))).)))))..........((((((...(((.(((-...(((.(---(.(((((((((....))).)--))))).))))).....)))..))))))))).......((((....)))).................----------------------------------------
Query: GTGAAATTTCTCAAGCTTTGGATGGCTTTTTGTCTGTCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTTGTTGGGACGGCTGGCCTTAAAAGCATTAGCTGATCCTTGTGTGCCACTGGTTCTACTCAGCGTGATAACAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGTT--------CTCATTTGGGTTGCTTCTAAACTTGGTTTTGCAGATTCTTGAATCTGTGTTCCACTTTTCAGCTTTGA
       ..........(((((((..(.((..(.....)...)).)..))).)))).....((.(...((..((((((.....)))))))).).))...........(((((....(((..((....((..(...(.(((((((((....))).)..))))).)).)).....))...))).)))))--------(((....)))..........................................................
 CBCs: ______________((___(__________________)___))___________(_(_________(___________)_____)_)________________(_______________(_______________________________________)______________)____________(________)__________________________________________________________
HCBCs: ______________________(____________)__________________________________(_____)________________________(_______((___(_________(________(_(___________)___)_____)_________)____))____)__________(______)___________________________________________________________
Transferred percentage of helices I: 84.615
II: 84.615
III: 88.462
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured ectomycorrhizal fungus see NCBI Taxonomy
78191130 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
Clavulina see NCBI Taxonomy
Clavulina sp. A32 see NCBI Taxonomy
27497403 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 370
End: 617

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