Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 15027035

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 15027035 see NCBI Nucleotide
Accession AJ311881
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; Glomerella ; Glomerella cingulata 
Sequence ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCCGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAARCCCCCAATTTTCCAAAGGTTGA
Structure ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((.(((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).))))))...))..(((((((...))))))).
Method 2: Homology modeled
Energy -48.3 kcal/mol
Model 117557332
Alignment 
Sbjct: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCTCTACGGTTGACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACATTTCGTCTCGCATTGGGATTCGGAGGGACTCTAGCCGTAAAACCCCCAATTTTACTAAGGTTGA
       ....((((..((((((...)))))).))))((((.(((((.....))))))))).....(((..((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).))))....)))..(((((((...))))))).
Query: ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACAGCCGATGTAGGCCCTCAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACTTTACGTCTCGCACTGGGATCCGGAGGGACTCTTGCCGTAAARCCCCCAATTTTCCAAAGGTTGA
       ....((((..((((((...)))))).))))((((.(((((.....))))))))).....((...((((((((((((.((((...((((.((((.((..((.....))))))))..)))))))))))))..))).)))).....))..(((((((...))))))).
 CBCs: _______________________________________(_____)_______________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________(________________________________________)____________________________________________
Transferred percentage of helices I: 100
II: 100
III: 96.774
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Ascomycota see NCBI Taxonomy
saccharomyceta see NCBI Taxonomy
Pezizomycotina see NCBI Taxonomy
leotiomyceta see NCBI Taxonomy
sordariomyceta see NCBI Taxonomy
Sordariomycetes see NCBI Taxonomy
Hypocreomycetidae see NCBI Taxonomy
Hypocreomycetidae incertae sedis see NCBI Taxonomy
Glomerellaceae see NCBI Taxonomy
Glomerella see NCBI Taxonomy
Glomerella cingulata see NCBI Taxonomy
304434484 (Method 3) see NCBI Nucleotide
Colletotrichum gloeosporioides see NCBI Taxonomy
Annotation Process: HMM annotation
Start: 356
End: 520

If you use the database please cite.