Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 104304696

Figure

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Details

GI 104304696 see NCBI Nucleotide
Accession DQ481968
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; environmental samples ; uncultured Clavulinaceae 
Sequence GTGAAGTTCTCAAGCTAGGTGCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGGTATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGCTTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTCTAATCTGGTTGCAAGATCTTGAATCCTGCTCATTTTCATTTTGA
Structure .........(((((((((((((......)).........)).)..).)))))))....(((((..((((..(..(((....)))))))).))))).......(..(((..(.(.(((.(...((.(((((((((((((((((((((....))).)..)))))))....).....))...)))))))))).)..))).).))))........(((....)))...........................
Method 2: Homology modeled
Energy -2.7 kcal/mol
Model 163257988
Alignment 
Sbjct: ATGAAACTCTCAAGCAGCATAGCTTTATTGTT--------AT---GTCTGTTTGGATTTGGACTCTGCTG---CTTTTAC---GAGCGGCTGGTCTTAAATGTATTAGCTGGCCCTTGTG---AGTCTTGGTTCTACTCGGCGTGATAATTATCTGA-CGTTGAGGACAGTCTTCGGACTGGCCAAGGTCTTCAAAGACCGCTTCTAATC--GTCCTCGGACAATCAAATTTCTACATCTGA-------
       .........((((((((((((((......)))--------))---)).)))))))....(((((..((((---(.((...---))))))).))))).....(.(..(((.((.(.(.(.(---(.((((((((((((((((((((((....))).).-))))))).....)....))...)))))))))).).)..).))))))).....--(((....)))....................-------
Query: GTGAAGTTCTCAAGCTAGGT-GCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGGTATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGCTTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTCTAATCTGGTTGCAAGATCTTGAATCCTGCTCATTTTCATTTTGA
       .........((((((((.((-((......)).........))....).)))))))....(((((..((((.....((......)).)))).))))).......(..(((..(.(...(.(...(..(((((((((.(((((((((((....))).)..)))))))..........))...))))))).)).)....).).))))........(((....)))...........................
 CBCs: _______________(________________________________)____________________________________________________________________(_(___(__(___________________________________________________________)_))_)_________________________________________________________
HCBCs: _____________(__(_(__(________)__________)____)___)__________(______(__________________)_____)_________________(___________________________((__(___________)____))____________________________________)_____________(_(____)_)___________________________
Transferred percentage of helices I: 85.714
II: 91.667
III: 85.294
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured Cantharellales see NCBI Taxonomy
116282531 (Method 3) see NCBI Nucleotide
environmental samples see NCBI Taxonomy
uncultured ectomycorrhiza (Basidiomycota) see NCBI Taxonomy
56713273 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 407
End: 654

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