Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 215433625

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 215433625 see NCBI Nucleotide
Accession EU862209
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; Clavulina ; Clavulina cinerea 
Sequence ACGAAATTTGTCAAGCTTGGATGGCTTTTTTGTCTATCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGGAACGGCTGGCCTTAAAAGCATTAGCTGATCCTCGTGTGGCACTGGTTCTACTCAGCGTGATAATAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGTCCTCATTTGGGTTGCTTCTAAACTTGGTTTTGCAGATTCTTCAATCTGTGTTCCACTTTTCAGCTTTGA
Structure .((((..((((((((.((((((((...(...).)))).).))).)))))).....)).))))..(((((...(((.(((.(((((((((..(...)))..)))))).)))).))).))))).(((...((((((.((((.....(.(((.(((((.((((....)))).)).))).))))..)))))))))).)))........(((...((((((.(.....)))))))..)))..............
Method 2: Homology modeled
Energy -22 kcal/mol
Model 215433632
Alignment 
Sbjct: GCGAAATTTCTCAAGCTTGGATGGATTTTTTGTCCGTCCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATT-GGTACGGCTGGCCTTAAAAGCATCAGCTGATCCTCGTGTGGCACTGGTTCTACTCAGCGTGATAACAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGCTCTCATTTGGGTTGCTTCTAAACTTGGTTTCACAGATTGTRCAATCTGTGTTCCAC-ATTCAGC-TTGACCTCGA
       (((((..((((((((.(((((((((..(...))))))..).))).))))).....))).))))).(((((...(((.-((.(((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((....((.(((.(((((.((((....)))).)).))).))))).)))))))))).)))........(((...((((((.(.....)))))))..))).-.......-..........
Query: ACGAAATTTGTCAAGCTTGGATGGCTTTTTTGTCTAT-CCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGGAACGGCTGGCCTTAAAAGCATTAGCTGATCCTCGTGTGGCACTGGTTCTACTCAGCGTGATAATAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGTCCTCATTTGGGTTGCTTCTAAACTTGGTTTTGCAGATTCTTCAATCTGTGTTCCACTTTTCAGCTTTGA------
       .((((..((.(((((.((((((((...(...).))))-.).))).)))))......)).))))..(((((...(((..((.(((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((.....(.(((.(((((.((((....)))).)).))).))))..)))))))))).)))........(((...((((((.(.....)))))))..)))..............------
 CBCs: ________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________((___________))___________________________________________________(_____________)___________________________________________(__________________________________)______________________________((________________))_________________________
Transferred percentage of helices I: 86.957
II: 100
III: 96.296
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
Clavulina see NCBI Taxonomy
Clavulina sp. PDD 89833 see NCBI Taxonomy
281376814 (Method 3) see NCBI Nucleotide
Clavulina sp. PDD 89847 see NCBI Taxonomy
281376817 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 433
End: 681

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