Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 224459493

Figure

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Details

GI 224459493 see NCBI Nucleotide
Accession FJ197924
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; environmental samples ; uncultured Clavulina 
Sequence GCGAAATTCTTCAAGCCTTGGATGGATTTTTTTGTCTGTCCTTGGGCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGGACGGCTGGCCTTAAAAGCATTAGCCGATCCTCGTGTGGTACTGGTTCTACTCAGCGTGATAACAGTCTGATCGTTGAGGACATCTTCTGGGATGGCCAGTCATCATTTGGGTTGCTTCTAAACCGGTTTCGCAGATTGCTCAATCTGTGTGCCACTTTTCAGCTTTGA
Structure .((((..((((((((.((((((((((...(...))))))).).)))))))).....))).))))..(((((...(((.(((.((((((((..(...)))..)))))).)))..))).))))).(((...((((((.(((((....(.(((.(((((.((((....)))).)).))).)))).))))))))))).)))........((..(((((((.(.....))))))).)))...............
Method 2: Homology modeled
Energy -22.4 kcal/mol
Model 199594073
Alignment 
Sbjct: ACGAAATTTCTCAAG-CTTGGATGG---CCTTTGTCTATCCTT-AGCTTGGTTGTTGGGCTTTGCCGTGCCCTTCATTGGGACGGCTGGCCTTAAAAGCATTAGCTGATCCTCGTGTGGTACTGGTTCTACTCAGCGTGATAATAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGTTCTCATTTGGGTTGCTTCTAAACCTGGTTTTGCAGATTCTTCAATCTGTGTTCCAC-TTTCAGCTTTGA
       .((((..((((((((-((.((((((---.(...).))))).).-))))))).....))).))))..(((((...(((.(((.((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((....((.(((.(((((.((((....)))).)).))).))))).)))))))))).))).........((...((((((.(.....)))))))..))..-............
Query: GCGAAATTCTTCAAGCCTTGGATGGATTTTTTTGTCTGTCCTTGGGCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGGACGGCTGGCCTTAAAAGCATTAGCCGATCCTCGTGTGGTACTGGTTCTACTCAGCGTGATAACAGTCTGATCGTTGAGGACATCTTCTGGGATGGCCAGTCATCATTTGGGTTGCTTCTAAACC-GGTTTCGCAGATTGCTCAATCTGTGTGCCACTTTTCAGCTTTGA
       .((((..((((((((.((.((((((....(...).))))).)..))))))).....))).))))..(((((...(((.(((.((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((.....(.(((.(((((.((((....)))).)).))).))))..)))))))))).)))........-((...((((((.(.....)))))))..))...............
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ________((_______(____(______(___)___)______)___________))___________(_____________(_____________________)____________)___________________________________(___(________)___)_______________________________________(__________________)___________________
Transferred percentage of helices I: 100
II: 100
III: 96.296
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
Clavulina see NCBI Taxonomy
Clavulina rugosa see NCBI Taxonomy
215433618 (Method 3) see NCBI Nucleotide
Clavulina cf. rugosa src661 see NCBI Taxonomy
115605489 (Method 3) see NCBI Nucleotide
environmental samples see NCBI Taxonomy
uncultured Clavulina see NCBI Taxonomy
298162495 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 338
End: 586

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