Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 291337370

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 291337370 see NCBI Nucleotide
Accession GQ219825
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; environmental samples ; uncultured Clavulina 
Sequence GTGAAATTTCTCAAGCTTTTGGATGGCTTCTTTTGTCTGTCCCTTAGCATTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGGATGGCTGGCCTTAAAAGCATTAGCTGATCCTCATGTGGCACTGGTTCTACTCAGCGTGATAATAATCTGATCGCTGAGGACATCTTTTCGGGATGGCCAGTTCTCATTTGGGTTGCTTCTAACCTGGTTTTGCAGATGCTTCAATCTGTGTTCCACTTTTTTCAGCTTTGA
Structure (((((..(((((((...(((((((((....(...).))))..).))).))))).....))).))))).(((((...(((.((.(((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((....((.(((.((((((((((....))))).)).))).))))).)))))))))).))).......(((...((((((((...)).))))))..)))................
Method 2: Homology modeled
Energy -10.4 kcal/mol
Model 215433632
Alignment 
Sbjct: GCGAAATTTCTCAAGC--TTGGATGGATT-TTTTGTCCGTCCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGTACGGCTGGCCTTAAAAGCATCAGCTGATCCTCGTGTGGCACTGGTTCTACTCAGCGTGATAACAGTCTGATCGCTGAGGACATCTTTT-GGGATGGCCAGCTCTCATTTGGGTTGCTTCTAAACTTGGTTTCACAGATTGTRCAATCTGTGTTCCACATTCAGCTTGACCTCGA
       (((((..((((((((.--(((((((((..-(...))))))..).))).))))).....))).))))).(((((...(((.((.(((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((....((.(((.(((((.((((....))))-.)).))).))))).)))))))))).)))........(((...((((((.(.....)))))))..)))..................
Query: GTGAAATTTCTCAAGCTTTTGGATGGCTTCTTTTGTCTGTCCCTTAGCATTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGGATGGCTGGCCTTAAAAGCATTAGCTGATCCTCATGTGGCACTGGTTCTACTCAGCGTGATAATAATCTGATCGCTGAGGACATCTTTTCGGGATGGCCAGTTCTCATTTGGGTTGCTTCT-AACCTGGTTTTGCAGATGCTTCAATCTGTGTTCCACTTTT--TTCAGCTTTGA
       (((((..(((((((....((((((((....(...).))))..).)))..)))).....))).))))).(((((...(((.((.(((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((....((.(((.(((((.((((....))))..)).))).))))).)))))))))).)))...-....(((...((((((........))))))..))).....--...........
 CBCs: ___________________________________________________________________________________________________________________________________________________(___________________________________)_________________________________________________________________________
HCBCs: _(______________________(____________)___________________________)____________(_____(____(_____________)____)______)__________________________________________________________________________________________________((________________))_______________________
Transferred percentage of helices I: 91.304
II: 100
III: 100
IV: 90
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
Clavulina see NCBI Taxonomy
Clavulina cf. cristata SY-2008 see NCBI Taxonomy
260161912 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 433
End: 686

If you use the database please cite.