Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 68271237

Figure

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Details

GI 68271237 see NCBI Nucleotide
Accession DQ056371
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; Clavulina ; Clavulina caespitosa 
Sequence ACGAAATTTCTCAAGCTTAGGATGATGATCATCACCTTAGTCTTGGTTATTGGGCTTTGCCGTTTCCTTTGTTTGGGACGGCTGGCCTTAAAAGTATTAGCTGATCCTGGTGGTGGTACTGGTTCTACTCAAGCGTGATAATAATCTGATCGCTGAGGACATCTTTTGGGATGGCCGGTTATCAATTTGGGTTGCTCATAGTCTGGTTTCGCAGATCTTCCCCCCCTCTGATCTGCGGCTCCACTTTTTCAGATTTGA
Structure ..........(((((((.(((..(.(((...)))))))))).)))).....((.(...(((((.((...(....)))))))).).))...........(((((....(.((.(.((.(.((.((...(((.((((((((....))).)..))))))))))))))..).)..).).)))))........((((((....))))))......................................................
Method 2: Homology modeled
Energy -2.8 kcal/mol
Model 215433637
Alignment 
Sbjct: GCGAAATTTCTCAAGCTT-GGATGGCCTTTTTGTCTGTCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTTG-TTGGGACGGCTGGCCTTAAAAGCATTAGCTGATCCTCGT-GTGGCACTGGTTCTACTC-AGCGTGATAACAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGTTCTC-ATTTGGGTTGCTTCCAAACTTGGTTTTGCAGAT--------TCTTCAATCTGT-GTTCCAC-TTTTCAGCTTTGA
       ..........(((((((.-((..((((.....)...))))).))).)))).....((.(...(((((.((...(.-..)))))))).).))...........(((((....((((-(.((.(.((.((...(((-((((((((....))).)..))))))))))))))..).)..))).)))))...-....(((((..(...))))))............--------............-.......-.............
Query: ACGAAATTTCTCAAGCTTAGGATGA--TGATCATC--ACCTTAGTCTTGGTTATTGGGCTTTGCCGTTTCCTTTGTTTGGGACGGCTGGCCTTAAAAGTATTAGCTGATCCTGGTGGTGGTACTGGTTCTACTCAAGCGTGATAATAATCTGATCGCTGAGGACATCTTTTGGGATGGCCGGTTATCAATTTGGGTTGC-TCATAGTCTGGTTTCGCAGATCTTCCCCCCCTCTGATCTGCGGCTCCACTTTTTCAGATTTGA
       ..........(((((((..((..(.--........--.))).))).)))).....((.(...(((((.((...(....)))))))).).))...........(((((....(.((.(.((.(.((.((...(((.((((((((....))).)..))))))))))))))..).)..).).)))))........(((((..-....)))))......................................................
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ______________(_____________________________)____________________________________________________________(____________________________________(____)________________________________)____________(((_________)))_______________________________________________________
Transferred percentage of helices I: 76.923
II: 100
III: 96.429
IV: 83.333
Annotation Process: HMM annotation
Start: 391
End: 648

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