Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 13398477

Figure

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Details

GI 13398477 see NCBI Nucleotide
Accession AF335456
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; Clavulina ; Clavulina cinerea 
Sequence GTGAAATTTCTCAAAGCTTGGATGGCCTTTTTTTGTCTGTCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTGTATTGGGACGGCTGGCCTTAAAAACATTAGCTGATCCTTGTGCGGCACTGGTTCTACTCAGCGTGATAATAGTCTGATCGCTGAGGACGTCTTTTGGGATGGCCAGTGCTCATTTGGGTTGCTTATAGACCTGGTCTTGCAGATTCTTCAATCTGTGGTTCCACTTTTCAGCTTTGA
Structure (((((..(((((.(((.((((((((.....(...).)))).).))).))))).....))).))))).(((((..((((.((.((((((((..((...)))..)))))).)))..))))))))).(((...((((((.((((...(.(.(((.(((((.((((....)))).)).))).))))).)))))))))).)))........(((...((((((.(.....)))))).)..)))..............
Method 2: Homology modeled
Energy -8.3 kcal/mol
Model 215433632
Alignment 
Sbjct: GCGAAATTTCTC-AAGCTTGGATGG--ATTTTTTGTCCGTCCCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTTCATTGGTACGGCTGGCCTTAAAAGCATCAGCTGATCCTCGTGTGGCACTGGTTCTACTCAGCGTGATAACAGTCTGATCGCTGAGGACATCTTTTGGGATGGCCAGCTCTCATTTGGGTTGCTTCTAAACTTGGTTTCACAGATTGTRCAATCTGT-GTTCCAC-ATTCAGC-TTGACCTCGA
       (((((..(((((-(((.((((((((--(..(...))))))..).))).))))).....))).))))).(((((...(((.((.(((((((((..(...)))..)))))).)))..))).))))).(((...((((((.((((....((.(((.(((((.((((....)))).)).))).))))).)))))))))).)))........(((...((((((.(.....))))))-)..))).-.......-..........
Query: GTGAAATTTCTCAAAGCTTGGATGGCCTTTTTTTGTCTGT-CCTTAGCCTTGGTTGTTGGGCTTTGCCGTGTCCTGTATTGGGACGGCTGGCCTTAAAAACATTAGCTGATCCTTGTGCGGCACTGGTTCTACTCAGCGTGATAATAGTCTGATCGCTGAGGACGTCTTTTGGGATGGCCAGTGCTCATTTGGGTTGCTTATAGACCTGGTCTTGCAGATTCTTCAATCTGTGGTTCCACTTTTCAGCTTTGA------
       (((((..(((((.(((.((((((((.....(...).))))-.).))).))))).....))).))))).(((((...(((.((.((((((((...(...).)..)))))).)))..))).))))).(((...((((((.((((.....(.(((.(((((.((((....)))).)).))).))))..)))))))))).)))........(((...((((((.(.....)))))).)..)))..............------
 CBCs: ___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _(_____________________(_____________)___________________________)__________(____________(_____________)_____________)_____________________________(__________________________________)______________________________((________________)_)_________________________
Transferred percentage of helices I: 95.652
II: 95
III: 96.296
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured Clavulina see NCBI Taxonomy
189306934 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 388
End: 639

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