Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 99030429

Figure

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Details

GI 99030429 see NCBI Nucleotide
Accession DQ492694
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Cantharellales Clavulinaceae Multiclavula Multiclavula ichthyiformis 
Sequence ATGAAGCTCTCAAGCTGATTACTTTATTGTAAATCGCAGGCTTGGATTTGGACTTTGGAGTTTTCTCATCAGATAGCCCCTGGTCTTAAATACATTAGCTGACCCTCGTTTGTGGAATCGGTTCTACTCGACGTGATAAGTATCAATCGTTGAGGACATTCTTAGGGATGGCCGGGATCACCTAGGGACGCTTACAATTGTGTCTTGGACACACTTTTTTCAATT
Structure .........(((((((((((((......)).)))))...))))))....(((((..((.((.((((....))).))).)).))))).......(..(((.(.((((.(.....((.(((((((((((((((((((((....))).).)))))))....)....))....)))).)).)).)).)))).)))))......((.(...).))...............
Method 2: Homology modeled
Energy -13.8 kcal/mol
Model 224459523
Alignment
Sbjct: ATGAAGCTCTCAAGCAGAATCCTTTATTGTGATTCTT--GTTTGGATTTGAACTCTGCCGTGTT--------AAAGCGGCTGGTTCTAAAAGCATTAGCTGGTCCTTGATTTT---CTTGGTTCTACTCGGCGTGATAATTATCTAACGTTGAGGACATCTCTTTATTGAGGTGGCCAGGGTTTTCTATGGGTTGCTTCTAATCGTCTTCACAGACA-ATATATTTCAATATCTGA
       .........(((((((((((((......).))))).)--))))))....(((((..(((((.(.--------..)))))).)))))....((.(..(((.((((((.((....---(((((((((((((((((((((....))).).)))))))....)......)..)....)))).)))...)).).)))))))))))....(((.(...)))).-..................
Query: ATGAAGCTCTCAAGCTGATTACTTTATTGTAAATCGCAGGCTTGGATTTGGACTTTGGAGTTTTCTCATCAGATAGCCCCTGGTCTTAAATACATTAGCTGACCCTCGTTTGTGGAATCGGTTCTACTCGACGTGATAAGTATCAATCGTTGAGGACA----TTCTTAGGGATGGCCGGGATCACCTA-GGGACGCTTACAATTGT-GTCTTGGACACACTTTTTTCAATT-----
       .........((((((.((((.(......)..))))....))))))....(((((..((.((.(...........))).)).))))).......(..(((.(.((((.(.........(((((((..(((((((((((....))).).)))))))....----......)....)))).)).....).)-))).)))))......((-.(...).))...............-----
 CBCs: __________________(_____________)_________________(______(____________________)_____)_______________________________________________________________________________________________________________________________________________________
HCBCs: _____________(__________________________)________(___________________________________)______________(_(_______________(___________(__________________)____________________________)____________)_)______________(___)_______________________
Transferred percentage of helices I: 84.615
II: 90.909
III: 80
IV: 75
Annotation Process: Mixed HMM and Genbank annotation
Start: 358
End: 582

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