Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 52547259

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 52547259 see NCBI Nucleotide
Accession AY722783
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Metazoa ; Eumetazoa ; Cnidaria ; Anthozoa ; Hexacorallia ; Scleractinia ; Fungiina ; Siderastreidae ; Psammocora ; Psammocora contigua 
Sequence GGATATCATCCAACGCACTTTGCGGTGCGGCGTTGAGGCGTCACGGCCCTTCTCGCGGCCGTGTCCCTTGAAAGTCAGAGAGACTCGCCGCGGCACGGGTTCGTTCCCTGCACACTCGCGGAGGCTAAAAATGCTTTTGCCCTTCGCGTGCACGGGATGCGGCCCGCCCGCCGAGTCGCGGAGGCGAACACATTTAAACTCTTGA
Structure ..............((((.(...))))).(.(((((((.(.((((((..((...).)))))))).))))))...)).....((((((.((((......(...(((.(((((((....((((((((.((((....))))).)))))))))))..).)..).)))))))..).))))))...((((.(((.....))...)))))..
Method 2: Homology modeled
Energy -14.6 kcal/mol
Model 205345265
Alignment 
Sbjct: GGATATCATCCAACGCACTTAGTCGTGCGGCGTTGAGGCGTCACGGCCC-TCATGCTGCCGTGTCCCTTGAAAGTCAGAGAGACTCG-CGCGGCACGGGTTCGTTCCCTGCACACTCGCGGAGGCTAAAAACGCTTTTGCCCTTCGCGTGCACGGGA--CGACCCGTCCG-CGAGTCGCGGAGGCGAACACTTTTTAAACTCTTGA
       ..............((((......)))).(.(((((((.(.((((((..-.......))))))).))))))...)).....((((((-((((......(...(((..((((((....((((((((.((((....))))).)))))))))))..).).--.)))))))..)-))))))...((((.(((.(...)))...)))))..
Query: GGATATCATCCAACGCACTTTGCGGTGCGGCGTTGAGGCGTCACGGCCCTTCTCGCGGCCGTGTCCCTTGAAAGTCAGAGAGACTCGCCGCGGCACGGGTTCGTTCCCTGCACACTCGCGGAGGCTAAAAATGCTTTTGCCCTTCGCGTGCACGGGATGCGGCCCGCCCGCCGAGTCGCGGAGGCGAACAC-ATTTAAACTCTTGA
       ..............((((......)))).(.(((((((.(.((((((..........))))))).))))))...)).....((((((.((((......(...(((..((((((....((((((((.((((....))))).)))))))))))..).)....)))))))..).))))))...((((.(((.(.-.)))...)))))..
 CBCs: ______________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _________________________________________________________________________________________(_____________(_________________________________________________________)____)_______________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Metazoa see NCBI Taxonomy
Eumetazoa see NCBI Taxonomy
Cnidaria see NCBI Taxonomy
Anthozoa see NCBI Taxonomy
Hexacorallia see NCBI Taxonomy
Scleractinia see NCBI Taxonomy
Fungiina see NCBI Taxonomy
Siderastreidae see NCBI Taxonomy
Psammocora see NCBI Taxonomy
Psammocora contigua see NCBI Taxonomy
52547258 (Method 3) see NCBI Nucleotide
Fungiidae see NCBI Taxonomy
Fungia see NCBI Taxonomy
Fungia fungites see NCBI Taxonomy
162423809 (Method 3) see NCBI Nucleotide
Fungia sp. AG-2007-A see NCBI Taxonomy
162423831 (Method 3) see NCBI Nucleotide
Zoopilus see NCBI Taxonomy
Zoopilus echinatus see NCBI Taxonomy
162423838 (Method 3) see NCBI Nucleotide
Sandalolitha see NCBI Taxonomy
Sandalolitha dentata see NCBI Taxonomy
162423834 (Method 3) see NCBI Nucleotide
162423835 (Method 3) see NCBI Nucleotide
162423836 (Method 3) see NCBI Nucleotide
Podabacia see NCBI Taxonomy
Podabacia motuporensis see NCBI Taxonomy
162423826 (Method 3) see NCBI Nucleotide
Podabacia sp. AG-2007-B see NCBI Taxonomy
162423827 (Method 3) see NCBI Nucleotide
Herpolitha see NCBI Taxonomy
Herpolitha limax see NCBI Taxonomy
162423820 (Method 3) see NCBI Nucleotide
162423821 (Method 3) see NCBI Nucleotide
Halomitra see NCBI Taxonomy
Halomitra pileus see NCBI Taxonomy
162423818 (Method 3) see NCBI Nucleotide
Ctenactis see NCBI Taxonomy
Ctenactis crassa see NCBI Taxonomy
162423794 (Method 3) see NCBI Nucleotide
162423795 (Method 3) see NCBI Nucleotide
Ctenactis echinata see NCBI Taxonomy
162423796 (Method 3) see NCBI Nucleotide
162423797 (Method 3) see NCBI Nucleotide
Cycloseris see NCBI Taxonomy
Cycloseris costulata see NCBI Taxonomy
162423798 (Method 3) see NCBI Nucleotide
162423799 (Method 3) see NCBI Nucleotide
162423800 (Method 3) see NCBI Nucleotide
Cycloseris cyclolites see NCBI Taxonomy
162423801 (Method 3) see NCBI Nucleotide
Cycloseris sinensis see NCBI Taxonomy
162423802 (Method 3) see NCBI Nucleotide
Cycloseris tenuis see NCBI Taxonomy
162423803 (Method 3) see NCBI Nucleotide
Cycloseris vaughani see NCBI Taxonomy
162423804 (Method 3) see NCBI Nucleotide
Lithophyllon see NCBI Taxonomy
Lithophyllon mokai see NCBI Taxonomy
162423822 (Method 3) see NCBI Nucleotide
Lithophyllon undulatum see NCBI Taxonomy
162423823 (Method 3) see NCBI Nucleotide
162423824 (Method 3) see NCBI Nucleotide
Verrillofungia see NCBI Taxonomy
Verrillofungia scabra see NCBI Taxonomy
162423813 (Method 3) see NCBI Nucleotide
Verrillofungia spinifer see NCBI Taxonomy
162423814 (Method 3) see NCBI Nucleotide
Pleuractis see NCBI Taxonomy
Pleuractis paumotensis see NCBI Taxonomy
162423830 (Method 3) see NCBI Nucleotide
Pleuractis granulosa see NCBI Taxonomy
162423816 (Method 3) see NCBI Nucleotide
Pleuractis gravis see NCBI Taxonomy
162423828 (Method 3) see NCBI Nucleotide
Pleuractis taiwanensis see NCBI Taxonomy
162423832 (Method 3) see NCBI Nucleotide
Lobactis see NCBI Taxonomy
Lobactis scutaria see NCBI Taxonomy
162423810 (Method 3) see NCBI Nucleotide
162423811 (Method 3) see NCBI Nucleotide
Danafungia see NCBI Taxonomy
Danafungia horrida see NCBI Taxonomy
162423806 (Method 3) see NCBI Nucleotide
Danafungia scruposa see NCBI Taxonomy
162423807 (Method 3) see NCBI Nucleotide
162423808 (Method 3) see NCBI Nucleotide
Faviina see NCBI Taxonomy
Faviidae see NCBI Taxonomy
Oulastrea see NCBI Taxonomy
Oulastrea crispata see NCBI Taxonomy
77980188 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 511
End: 715

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