Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 95118535

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 95118535 see NCBI Nucleotide
Accession DQ497944
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; environmental samples ; uncultured Clavulinaceae 
Sequence GTGAAGTTCTCAAGCTAGGTGCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGGTATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGCTTTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTTCTAATCTGGTTGCAAGATTCTTGAATCCTGCTCCATTTTTCAATTTGA
Structure .........((((((((((((.((.(.((.....))))).)))..)))))))))....((((...((((..(.((......)).))))).).)))..........(((...(((((..((((.((.(((((((((((((((((((((....))).).).))))))....).....))...)))))))))).)).)))))))))..........(((....)))..............................
Method 2: Homology modeled
Energy -14.8 kcal/mol
Model 133753188
Alignment 
Sbjct: GCGAAATTCTCAAGCCGTGGATGCTTTTTG-------TGAAGTGTTCTCAGCTTGGTTATTGGGCTTTGCCGTGTCCT---TTTGGGATGGCTGGCCTTAAAAGCATTAGC--TGATCCTCATGATGGCATTGGTTCTACTCAGCGTGATAATAAACTGACCGCTGAGGACATCTTTCGGGGTGGCCAATTCTCGTTTGGGTTGCTCTCTAATCTGGTTTATGGGTTGCTAATAACAATCCGTTCCATTTTC--AGTTGA
       .........((((((..(((((((((.(..-------.)))))))))..))))))).....((((...((((..((((---...)))))))).).)))..........(((--.(((((..((((.((.(((((((((((((((((((.(....).).).).))))))....).....))...)))))))))))))..))))))))..........(((....)))..........................--......
Query: GTGAAGTTCTCAAGC--TAGGTGCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGG-TATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGCTTTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTTCTAATCTGGTTGCAAGATTCTTGA----ATCCTGCTCCATTTTTCAATTTGA
       .........((((((--(..(((.((.(..........))).)))....)))))))-....((((...((((..(.((......)).))))).).)))..........(((...(((((.....(.((.(((((((((((((((((((.(....).).).).))))))....).....))...)))))))))).....))))))))..........(((....)))......----........................
 CBCs: ____________________(_______________________)_______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ___________________________(__________)________________________(_______(________________)______)____________________(_______(_____________________(___________)_________________________________)_______)________________(______)___________________________________
Transferred percentage of helices I: 81.25
II: 91.667
III: 91.176
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured Clavulinaceae see NCBI Taxonomy
104304698 (Method 2) see NCBI Nucleotide
104304700 (Method 2) see NCBI Nucleotide
204306504 (Method 2) see NCBI Nucleotide
209916636 (Method 2) see NCBI Nucleotide
environmental samples see NCBI Taxonomy
uncultured Basidiomycota see NCBI Taxonomy
311334211 (Method 2) see NCBI Nucleotide
uncultured ectomycorrhiza (Basidiomycota) see NCBI Taxonomy
189306931 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 390
End: 642

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