Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 110006726

Figure

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Details

GI 110006726 see NCBI Nucleotide
Accession DQ664194
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Pucciniomycotina ; Pucciniomycetes ; Pucciniales ; Pucciniaceae ; Puccinia ; Puccinia triticina 
Sequence GGCACACCTGTTTGAGTGTCATGAAACCCTCTCATTAAACATTTTTTAACTTGTTTAAACTTGTTTAGTGGATGTTGAGTGTTGCTGTCATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGAAAGTAGCAATACTTGCCATCTTGTTTAATATAAGGGACTTCTAAAAACCCCCCTTTTTTCAAAATTTAAGA
Structure .........................(.(.((.(((((((((...(((((....)).)))..))))))))))).).)(((((..((((....)))).)))))....(.((.(((((.(((((.(((((((.(((.......((((((..(.(((((..(.(.......).)))))).)..))))).)))).))))))))....))))))))).))).........((((...)))).......
Method 2: Homology modeled
Energy -8.41 kcal/mol
Model 37703612
Alignment 
Sbjct: --------------------ATGAAACCCTCTCATTAAACATTTTTTAACTTGTTTAAACTTGTTTAGTGGATGTTGAGTGTTGCTGTCATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTGT-ATAATTTTATCATCACATCAAGGAAAGTAGCAATACTTGCCATCTTGTTTAATATAAGGGACTTCTAAAAACCCCCCTTTTTTCCAAAATTTAAGA
       --------------------.....(.(.((.(((((((((...(((((....)).)))..))))))))))).).)(((((..((((....)))).)))))....(.((.(((((.(((((.(((((((.(((.......((((((-.(.(((((..(.(.......).)))))).)..))))).)))).))))))))....))))))))).))).........((((....)))).......
Query: GGCACACCTGTTTGAGTGTCATGAAACCCTCTCATTAAACATTTTTTAACTTGTTTAAACTTGTTTAGTGGATGTTGAGTGTTGCTGTCATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGAAAGTAGCAATACTTGCCATCTTGTTTAATATAAGGGACTTCTAAAAACCCCCCTTTTTT-CAAAATTTAAGA
       .........................(.(.((.(((((((((...(((((....)).)))..))))))))))).).)(((((..((((....)))).)))))....(.((.(((((.(((((.(((((((.(((.......((((((..(.(((((..(.(.......).)))))).)..))))).)))).))))))))....))))))))).))).........((((..-.)))).......
 CBCs: ___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Pucciniomycotina see NCBI Taxonomy
Pucciniomycetes see NCBI Taxonomy
Pucciniales see NCBI Taxonomy
Pucciniaceae see NCBI Taxonomy
Puccinia see NCBI Taxonomy
Puccinia recondita see NCBI Taxonomy
169604 (Method 3) see NCBI Nucleotide
169620 (Method 3) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 1
End: 242

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