Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 110903728

Figure

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Details

GI 110903728 see NCBI Nucleotide
Accession DQ821712
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Pucciniomycotina ; Pucciniomycetes ; Pucciniales ; Pucciniaceae ; Puccinia ; Puccinia myrsiphylli 
Sequence ATGAAACCCTCTCATTAAACAATTCCTTTAAGGAACTGTTTAGTGGATGTTGAGTGTTGCTGTCATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATGAGTTGGATTGACTTGATGTAATAATTTTTTTTATCATCACATCAAGGAAAGTAGCAATACTTGCCATCTTGTTGAATGGGGACTTCTAAAAAACCCCTTTATTTAAGA
Structure .....(.(.((.(((((((((.(((((...))))).))))))))))).).)(((((..((((....)))).)))))....(.((.(((((.((((((.((((((.(((.......((.(((..(.(....((((..(.(.......).)))))).)..))).).)))).))))))))).)))))))).)))........(((....))).
Method 2: Homology modeled
Energy -6.91 kcal/mol
Model 63099029
Alignment 
Sbjct: ATGAAACCCTCTCATTAAACATTTTTAACTTGTTAAACTTGTTTAGTGGATGTTGAGTGTTGCTGTAATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATGAGTTGGATTGACTTGGTGTAATAA----TTTTATCATCACATCAAGGAAAGTAGCAATACTTGCCATCTTGTTTAACATTGAGAGACTTCTAAAAAAACACATCTTTTACTTAAGA
       .....(.(.((.(((((((((..(((((....)))))..))))))))))).).)(((((..((((....)))).)))))(...(.((.(((((..((((.(((((((.(((.......((((((..(.(----((((..(.(.......).)))))).)..))))).)))).)))))))).....))).))))).)))......)....((((....))))
Query: ATGAAACCCTCTCATTAAACAATTC---CTTTAAGGAACTGTTTAGTGGATGTTGAGTGTTGCTGTCATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATGAGTTGGATTGACTTGATGTAATAATTTTTTTTATCATCACATCAAGGAAAGTAGCAATACTTGCCATCTTGTTGAAT----GGGGACTTCTAAAAAACC----CCTTTATTTAAGA
       .....(.(.((.(((((((((..((---.......))..))))))))))).).)(((((..((((....)))).)))))....(.((.(((((..((.(..((((((.(((.......((.(((..(.(....((((..(.(.......).)))))).)..))).).)))).)))))).)..----)).))))).)))......----..(((....))).
 CBCs: ________________________(__________)_________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ________________________________________________________________________________________________(_________________________________________________________________________________________)__________________________________
Transferred percentage of helices I: 83.333
II: 100
III: 89.189
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Pucciniomycotina see NCBI Taxonomy
Pucciniomycetes see NCBI Taxonomy
Pucciniales see NCBI Taxonomy
Pucciniaceae see NCBI Taxonomy
Puccinia see NCBI Taxonomy
Puccinia recondita see NCBI Taxonomy
169599 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 411
End: 620

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