Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 104304698

Figure

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Details

GI 104304698 see NCBI Nucleotide
Accession DQ481970
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Cantharellales ; Clavulinaceae ; environmental samples ; uncultured Clavulinaceae 
Sequence GTGAAGTTCTCAAGCTAGGTGCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGGTATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGCTTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTTCTAATCTGGTTTGCAAGATTCTTGAATCCTGCTCCATTTTTCAATTTTGA
Structure .........((((((((((((.((.(.((.....))))).)))..)))))))))....((((...((((..(.((......)).))))).).)))..........(((..(((((..((((.((.(((((((((((((((((((((....))).).).))))))....).....))...)))))))))).)).)))))))))..........(.((....)))...............................
Method 2: Homology modeled
Energy -11.4 kcal/mol
Model 95118535
Alignment 
Sbjct: GTGAAGTTCTCAAGCTAGGTGCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGGTATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGCTTTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTTCTAATCTGG-TTGCAAGATTCTTGAATCCTGCTCCATTTTTCAATTTGA-
       .........((((((((((((.((.(.((.....))))).)))..)))))))))....((((...((((..(.((......)).))))).).)))..........(((...(((((..((((.((.(((((((((((((((((((((....))).).).))))))....).....))...)))))))))).)).)))))))))..........(-((....)))..............................-
Query: GTGAAGTTCTCAAGCTAGGTGCTTTTTTGCTTGACAAAAATGCGGTTAGCTTGGTATTGGGCTTTGCCGTGTCCTTCATTTGGAACGGCTGGTCTTAAAGACATTAGC-TTGACCCTTCACGTGGTATTGGTTCTACTCAGCGTGATAATAATCTAACCGCTGAGGACATCTTTTGGGGTGGCCAATTCTTGTTGGGGTTGCTTTCTAATCTGGTTTGCAAGATTCTTGAATCCTGCTCCATTTTTCAATTTTGA
       .........((((((((((((.((.(.((.....))))).)))..)))))))))....((((...((((..(.((......)).))))).).)))..........(((-..(((((..((((.((.(((((((((((((((((((((....))).).).))))))....).....))...)))))))))).)).)))))))))..........(.((....)))...............................
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured ectomycorrhizal fungus see NCBI Taxonomy
219930343 (Method 3) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Cantharellales see NCBI Taxonomy
Clavulinaceae see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured Clavulinaceae see NCBI Taxonomy
104304697 (Method 3) see NCBI Nucleotide
104304701 (Method 3) see NCBI Nucleotide
104304703 (Method 3) see NCBI Nucleotide
104304704 (Method 3) see NCBI Nucleotide
104304708 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 407
End: 660

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