Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 299789766

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 299789766 see NCBI Nucleotide
Accession GU598051
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Pucciniomycotina Pucciniomycetes Pucciniales Pucciniaceae Puccinia Puccinia graminis 
Sequence ATGAAACCCTCTCATTAAACATTTTATTTTTGATTTGTTTAGTGGATGTTGAGTGTTGCTGTACCTATAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGAAAGTAGTAAAACACTTGCCATCTTGTTTGTTAATAAGAGACTCCTAAAACCCAATATCTTATTTTTAAGA
Structure .....(.(.((.(((((((((....(((...))).))))))))))).).)(((((..(((((....))))).)))))....(.((..((((..((((.(((((((.(((.......((((((.((.(((((..(.(.......).)))))).))...))))).)))).)))))))).....))).))))..))).........(((((...).))))
Method 2: Homology modeled
Energy -4.01 kcal/mol
Model 300295303
Alignment
Sbjct: ATGAAACCCTCTCATTAAACATTTTTTAACYTGTTTAAAATTGTTTAGTGGATGTTGAGTGTTGCTGT--CATTAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGAAAGTAGC--AATACTTGCCATCTTGTTTAAT-ATGAGGGACTTCTAAAAACCCCCCTTTTTTTAAAATTTAAGA
       .....(.(.((.(((((((((....((...((....)))).))))))))))).).)(((((..((((.--...)))).)))))....(.((.(((((.(((((.(((((((.(((.......((((((..(.(((((..(.(.......).)))))).).--.))))).)))).))))))))..-..))))))))).))).............(((((...)).)))
Query: ATGAAACCCTCTCATTAAACATTTTAT------TTTTGATTTGTTTAGTGGATGTTGAGTGTTGCTGTACCTATAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGAAAGTAGTAAAACACTTGCCATCTTGTTTGTTAATAAGAGACTCCTAAAA----CCCAATATCTTATTTTTAAGA
       .....(.(.((.(((((((((....((------.....)).))))))))))).).)(((((..((((......)))).)))))....(.((..((((..((((.(((((((.(((.......((((((..(.(((((..(.(.......).)))))).)....))))).)))).)))))))).....))).))))..)))..----.......(((.(...)..)))
 CBCs: _________________________(_____________)___________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________________________________________________((_______________________(_____________________________________)________________)_____)__________________________(__________)_
Transferred percentage of helices I: 88.235
II: 100
III: 94.595
IV: 80
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Pucciniomycotina see NCBI Taxonomy
Pucciniomycetes see NCBI Taxonomy
Pucciniales see NCBI Taxonomy
Pucciniaceae see NCBI Taxonomy
Puccinia see NCBI Taxonomy
Puccinia graminis see NCBI Taxonomy
169593 (Method 3) see NCBI Nucleotide
169595 (Method 3) see NCBI Nucleotide
169596 (Method 3) see NCBI Nucleotide
169598 (Method 3) see NCBI Nucleotide
299789788 (Method 2) see NCBI Nucleotide
299789789 (Method 2) see NCBI Nucleotide
Puccinia graminis f. sp. avenae see NCBI Taxonomy
Puccinia graminis f. sp. dactylis see NCBI Taxonomy
Puccinia graminis f. sp. poae see NCBI Taxonomy
Puccinia graminis f. sp. lolii see NCBI Taxonomy
Puccinia dichondrae see NCBI Taxonomy
293321491 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 424
End: 640

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