Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 158605137

Figure

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Details

GI 158605137 see NCBI Nucleotide
Accession EU014048
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Pucciniomycotina ; Pucciniomycetes ; Pucciniales ; Pucciniaceae ; Puccinia ; Puccinia striiformis 
Sequence ATGAAACCCTCTCATTAAATAATTTTGATTAATTATTTTCAATGGATGTTGAGTGCTGCTGTAATTAGCTCACTTTAAATATATAAGTCACTTTTCTATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGATTGTAGCAATACTGCCATCTTATTTAAGGGAGACTCCTAAAAACCCAATTTTAACCTTAAGA
Structure .....(.(.((.((((.((.((...(((....))))))).)))))).).)(((((..((((....)))).)))))....(.((..((((.(((((..(((((.(((.......((((((..(.((...(((.(.......).))).)).)..))))))))).)))))..))))).))))..)))..........((.(...)..))
Method 2: Homology modeled
Energy -0.41 kcal/mol
Model 300295262
Alignment 
Sbjct: ATGAAAACCTCTCATTAAATAATTTTGATTAATTATTTTCAATGGATGTTGAGTGCTGCTGTTATTAGCTCACTTTAAATATATAAGTCACTTTTCTATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGATTGTAGCAATACTGCCATCTTGTTTAAGGGAGACTCCTAAAAACCCAATACTTTAACTTAAGA
       .....(((.((.((((.((.((...(((....))))))).)))))).)))(((((..((((....)))).)))))....(.((..((((.(((((..(((((.(((.......((((((..(.((...(((.(.......).))).)).)..))))))))).)))))..))))).))))..)))...........((((...).)))
Query: ATGAAACCCTCTCATTAAATAATTTTGATTAATTATTTTCAATGGATGTTGAGTGCTGCTGTAATTAGCTCACTTTAAATATATAAGTCACTTTTCTATAAGTTGGATTGACTTGGTGTAATAATTTTATCATCACATCAAGGATTGTAGCAATACTGCCATCTTATTTAAGGGAGACTCCTAAAAACCCAAT-TTTAACCTTAAGA
       .....(.(.((.((((.((.((...(((....))))))).)))))).).)(((((..((((....)))).)))))....(.((..((((.(((((..(((((.(((.......((((((..(.((...(((.(.......).))).)).)..))))))))).)))))..))))).))))..))).........-.((.(...)..))
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: __________________________________________________________________________________________________(__________________________________________________________________)_________________________________________
Transferred percentage of helices I: 93.75
II: 100
III: 100
IV: 75
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Pucciniomycotina see NCBI Taxonomy
Pucciniomycetes see NCBI Taxonomy
Pucciniales see NCBI Taxonomy
Pucciniaceae see NCBI Taxonomy
Puccinia see NCBI Taxonomy
Puccinia striiformis see NCBI Taxonomy
169619 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 439
End: 644

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