Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 37703613

Figure

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Details

GI 37703613 see NCBI Nucleotide
Accession AY187088
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Pucciniomycotina ; Pucciniomycetes ; Pucciniales ; Pucciniaceae ; Puccinia ; Puccinia recondita 
Sequence ATGAAACCCTCTCATTAAACATTTTCTTTCTTTGAAAGATTTGTTTAGTGGATGTTGAGTGTTGCTGTAATTAGCTCACTTTAAATATATCAGTCACTTTTCAAATGAGTTGGATTGACTTGGTGTTAATAATTTTATATCATCACATTAAGGAAAGTAGCAATACTTGCCATCTTATTTAATGAAAGAGACTTCTAAAGAACCATACTTTTTTTACTTAAGA
Structure .....(.(.((.(((((((((...((((((...))))))..))))))))))).).)(((((..((((....)))).))))).......(..((((..((((((((((((.(((.......(((((.(..(.((((..(..(.(.(...).).)))))).)..))))).)))).)))))))...))))).))))..)............(((.(......))))
Method 2: Homology modeled
Energy -4.51 kcal/mol
Model 85062674
Alignment 
Sbjct: ATGAAACCCTCTCATTAAACATTTTTTT------AATAATTTGTTTATTGGATGTTGAGTGTTGCTATAATTATAGCTCACTTTAAATATATAAGTCACTTTTCAAATAAGTTGGATTGACTTGGTG-TAATAATTT--TATCATCACATCAAGGAAAGTAGTCAAACACTTGCCATTTTTTTTGTAACAAGAGACTCCTAAAAACCCAATATCTATTTTTTTAAGA
       .....(.(.((.((.((((((...((..------...))..)))))).)))).).)(((((..(((((....))))).))))).......(..((((..((((((((.(((.(((.......(((((-(.((.((((--(..(.(.......).)))))).))...))))).)))).))).)))).)..))).))))..)............(((.(......))))
Query: ATGAAACCCTCTCATTAAACATTTTCTTTCTTTGAAAGATTTGTTTAGTGGATGTTGAGTGTTGCTGTAAT--TAGCTCACTTTAAATATATCAGTCACTTTTCAAATGAGTTGGATTGACTTGGTGTTAATAATTTTATATCATCACATTAAGGAAAGTAGC--AATACTTGCCATCTTATTTAATGAAAGAGACTTCTAAAGAACCATACTTTTTTTACTTAAGA
       .....(.(.((.((.((((((...((...........))..)))))).)))).).)(((((..((((....--)))).))))).......(..((((..(((..(((.(((.(((.......(((((.(..(.((((..(..(.(.......).)))))).).--.))))).)))).))).))).....))).))))..)............(((.(......))))
 CBCs: _________________________(___________)_____________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: __________________________________________________________________(______)__________________________________(_(_______________(________________________________________)_________)_)_________________________________(___________)_
Transferred percentage of helices I: 100
II: 90
III: 91.176
IV: 100
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Pucciniomycotina see NCBI Taxonomy
Pucciniomycetes see NCBI Taxonomy
Pucciniales see NCBI Taxonomy
Pucciniaceae see NCBI Taxonomy
Puccinia see NCBI Taxonomy
Puccinia recondita see NCBI Taxonomy
169601 (Method 3) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 429
End: 651

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