Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
   
Predict
   
Model
   
Annotate
   
Motif
   
Tools
 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications

ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 20404

Figure

(Save as SVG or PNG)

Details

GI 20404 see NCBI Nucleotide
Accession X68139
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Viridiplantae Streptophyta Streptophytina Embryophyta Tracheophyta Euphyllophyta Spermatophyta Magnoliophyta eudicotyledons core eudicotyledons rosids fabids Fagales Betulaceae Ostrya Ostrya virginiana 
Sequence TTGCCCCCAACCCCTCCGCCTCTTCGAGAGACGAGGGCAGTTTGCGGGGCGGACATTGGCCTCCCGTGAGCTTCCACTCGCGGCTGGCCTAAAAGCGAGTCCTAGGCGACGAGCGCCACGACAATCGGTGGTTGTAAAACCCTCGTGTCCCGTCGTTCGCGCCTCGTCGCTCATCTTGTGCTCTGTGACCCTGTAGCGTCGCGATCGCGACTCTTCCAATCG
Structure ((((((((((.((((.((.((((...)))).)).)))..).))).))))))).....((((..(((((((.(...))))))))..)))).....(((((....(((((((((((((.(((((.(((((.((((....)))).))).))...)))))..))).)))))))))..))))))....(..(....(.(((.(((((....))))).))...))).)
Method 3: Partial structure
Energy -62.2 kcal/mol
Model 57335172
Alignment
Sbjct: ACGCATCGTTGCCCCCAACCCCCATCGCCTCTCTAAGAGGCGAGGGCAGTTTGCGGGGCGGACATTGGCCTCCCGTGAGCTTCCACTTGCGGTTGGCCTAAAAGCGAGTCCTAGGCGACGAGCGCCACGACAATCGGTGGTTGCCAAAACCCTCGTGTCCCGTCGTGCGTGCCTCGTTGCTCATCTTGTGCTCTATGACCCTGTAGTGTCGCGATTGCGACTCTTCCAATGCGA
       ........((((((((((.((((.((((((((...)))))))))))..).))).))))))).....((((..(((((((.(...))))))))..)))).....(((((....(((((((((((((((((((.(((((.((((.....)))).))).))...)))))).))).)))))))))..))))))....(.((....(.(((.(((((....))))).))...)))).).
Query: ACCAATCGTTGCCCCCAACCCCT-CCGCCTCTTCGAGAGACGAGGGCAGTTTGCGGGGCGGACATTGGCCTCCCGTGAGCTTCCACTCGCGGCTGGCCTAAAAGCGAGTCCTAGGCGACGAGCGCCACGACAATCGGTGGTTG-TAAAACCCTCGTGTCCCGTCGTTCGCGCCTCGTCGCTCATCTTGTGCTCTGTGACCCTGTAGCGTCGCGATCGCGACTCTTCCAAT-CGA
       ........((((((((((.((((-.((.((((...)))).)).)))..).))).))))))).....((((..(((((((.(...))))))))..)))).....(((((....(((((((((((((.(((((.(((((.((((.-...)))).))).))...)))))..))).)))))))))..))))))....(..(....(.(((.(((((....))))).))...)))-.).
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ______________________(____________________)________________________________(__________)____________________________(______(_____________________________________________)_______)________________________________________________________
Transferred percentage of helices I: 90.909
II: 100
III: 96.97
IV: 91.667
Annotation Process: Blast (re)annotation
Start: 211
End: 442

If you use the database please cite.