Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 2149166

Figure

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Details

GI 2149166 see NCBI Nucleotide
Accession U82732
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Metazoa Eumetazoa Cnidaria Anthozoa Hexacorallia Scleractinia Astrocoeniina Acroporidae Acropora Acropora formosa 
Sequence TTTACCCATTCAACTGGGTGAGTTGGAGTTGGTCGCGGCCTGCAATCGCTTGGCCGCGTCCTCTAAAGAGCAGGACCCACAAACAACACTGTTAAATACTCGGTGT
Structure ((((((((......))))))))...((((.(((.((.....)).))))))).(..(.(((((((....)).))))))..).....((((((.........))))))
Method 3: Partial structure
Energy -24.3 kcal/mol
Model 23266947
Alignment
Sbjct: ----CCTCGTCTTTACCCATTC-ACTGGGTGAGTTGGAGTTGGTCGCGGCCTGCGATCGCTTGGCCGCGTCCTCTAAAGAGCAGGACCGGCAAACAACACTGTGAATTACTTAGTGT------
       ----.......((((((((...-..))))))))...((((.((((((.....)))))))))).((((.(((((((....)).))))))))).....((((((.........))))))------
Query: CGTCCCTCGTCTTTACCCATTCAACTGGGTGAGTTGGAGTTGGTCGCGGCCTGCAATCGCTTGGCCGCGTCCTCTAAAGAGCAGGACCCACAAACAACACTGTTAAATACTCGGTGTCGGACC
       ...........((((((((......))))))))...((((.(((.((.....)).))))))).(..(.(((((((....)).))))))..).....((((((.........))))))......
 CBCs: ___________________________________________________________________________________________________________________________
HCBCs: ____________________________________________________________________________________________________((_________))__________
Transferred percentage of helices I: 100
II: 90
III: 81.818
IV: 100
Annotation Process: Blast (re)annotation
Start: 255
End: 377

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