Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 8101461

Figure

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Details

GI 8101461 see NCBI Nucleotide
Accession AF133757
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; environmental samples ; uncultured fungus from Acaulospora colossica spore IVB.7 
Sequence TCGTGAATGAAATTTTTTACGGATCTGGGTTTTCCGAAATTTAATTCGGTAACCTAAAATTTATCTTAACAATATTGAGGTATGATATTGAAAATGTTCTATCTTGCATATTTTTTGTAAGTTCGTTGACAATGATTACCGATTGTTACGTCGCGTCATTCATCTTTTATTTAGGTGAGATGA
Structure (((((((..(....))))))))....(((((..(((((.(...)))))).)))))...........(((((((..(..((((..((((((..((((....(.((((((.......))))))).))))..))))).)))))))))))))...........(((((((.(.(...)).)))))))
Method 3: Partial structure
Energy -17.8 kcal/mol
Model 229359227
Alignment 
Sbjct: ----------ACAAATATCGTGAATGAAATTTTTTACGGATCTGGGTTTTCCGAAATTTAATTTGGTAACCTAAAATTTATCTTAACAATATTGAGGTATGATATTGGAAATGTTCTATCTTGCATATTTTTTTGTAAGTTCCGTTGACAATGATTACCGATTGTTACGTCGTGTCATTCATCTTTTATTTAGGTGAGATGATCCAATCTTTTGAATTTCAA------------
       ----------.......(((((((..(....))))))))....(((((..(((((.(...)))))).)))))...........(((((((..(..((((..((((((..((((....(.((((((.(...)..)))))))..))))..))))).)))))))))))))...........(((((((.(.(...)).)))))))....................------------
Query: GGGTTGGATCACAAATATCGTGAATGAAATTTTTTACGGATCTGGGTTTTCCGAAATTTAATTCGGTAACCTAAAATTTATCTTAACAATATTGAGGTATGATATTGAAAATGTTCTATCTTGCATA-TTTTTTGTAAGTT-CGTTGACAATGATTACCGATTGTTACGTCGCGTCATTCATCTTTTATTTAGGTGAGATGATTCAATCTTTTGAATTTCAACCTCAAGTCAAG
       .................(((((((..(....))))))))....(((((..(((((.(...)))))).)))))...........(((((((..(..((((..((((((..((((....(.((((((.(-..)..))))))).-))))..))))).)))))))))))))...........(((((((.(.(...)).)))))))................................
 CBCs: __________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ____________________________________________________(__________)__________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 100
Annotation Process: Blast (re)annotation
Start: 260
End: 491

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