Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 488013

Figure

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Details

GI 488013 see NCBI Nucleotide
Accession U04104
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetidae Agaricales Pleurotaceae Pleurotus Pleurotus pulmonarius 
Sequence GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTAAATTCTCAAACTCACATTTATTTGTGATGTTTGGATTGTTGGGGGTTG
Structure (((((....)))))...((((.(((...))).))))..(((((((..(.(...(((((((((....)))))))))).)..))))))).((.(..(.(((..(((((.(((..........)))..)))))...)))..).).))
Method 3: Partial structure
Energy -13 kcal/mol
Model 190361159
Alignment
Sbjct: TAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGAGCCCCC------CCGGGGGCCTCGG--TGTTGGGGGACGGCA----------------------------------------------
       ...(((((....)))))...((((.(((...))).))))..(((((((..(((...(((((((((....))))))))))))..))))))).((((..((((((..(((((((((.------...)))).)))))--.)))))).))))...----------------------------------------------
Query: -AAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATTA-AATTCTCAAACTCACATTTATTTGTGATGTTTGGATTGTTGGGGGTTGCTGGCTGTAACAAGTCGGCTCCTCTTAAAGTGCATTAGCAGGACTTCTC
       -..(((((....)))))...((((.(((...))).))))..(((((((..(.(...(((((((((....)))))))))).)..))))))).((.(..(.-(((..(((((.(((..........)))..)))))...)))..).).)).................................................
 CBCs: ____________________________________________________________((_(______)_))_________________________________(_(_(_(__________)_)__)_)_________________________________________________________________
HCBCs: ___________________________________________(__________________(________)_______________)___((_________(__________________________________)________))_________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 94.737
IV: 78.947
Annotation Process: Blast (re)annotation
Start: 0
End: 195

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