Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 182341563

Figure

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Details

GI 182341563 see NCBI Nucleotide
Accession EU554110
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Ascomycota saccharomyceta Pezizomycotina leotiomyceta sordariomyceta Sordariomycetes Hypocreomycetidae Hypocreomycetidae incertae sedis Glomerellaceae mitosporic Glomerellaceae Colletotrichum Colletotrichum caudatum 
Sequence GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCCGCTTGGTGTTGGGGCC
Structure (((((....)))))...((((.(((...))).))))..(((((((..(((...(((((((((....))))))))))))..)))))))..(.(...(((((..((((((...)))))).))))).).)
Method 3: Partial structure
Energy -36.8 kcal/mol
Model 190361177
Alignment
Sbjct: ----------------------------------------------------------------------------------------------------------------------------------TAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGACCGGCC----
       ----------------------------------------------------------------------------------------------------------------------------------...(((((....)))))...((((.(((...))).))))..(((((((..(((...(((((((((....))))))))))))..)))))))..(((...(((((..((((((...)))))).))))).))).....----
Query: TGGCGCCCGCCGGAGGATACCCAAACTCTATTTTAACGACGTCTCTTCTGAGTGGCACAAGCAAATAATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCCGCTTGGTGTTGGGGCCCTACGGTCG
       .....................................................................................................................................(((((....)))))...((((.(((...))).))))..(((((((..(((...(((((((((....))))))))))))..)))))))..(.(...(((((..((((((...)))))).))))).).).........
 CBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
Transferred percentage of helices I: 100
II: 100
III: 100
IV: 92.857
Annotation Process: Blast (re)annotation
Start: 79
End: 347

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