Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 293337679

Figure

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Details

GI 293337679 see NCBI Nucleotide
Accession GQ890327
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetidae Agaricales Cortinariaceae Cortinarius Cortinarius persplendidus 
Sequence TCAACCTCTTCAGCTCTTTTGTTGTTGAGTGTTGGATGTGGGGGTTCTCTTTTGCTGGTCTCTTCTTGAGATCGGCTCCCCTAAAATGCATTAGCGGAACAATTTGTTGACTCGTTCATTGGTGTGATAATTATCTACGCTATTGA
Structure ((((((((..(((........)))..))).))))).((.(((((.((..(...)..)).).)))).)).....((.((.....((((((....)))......)))...)).))..(((.(((((((((....))).)))))).)))
Method 3: Partial structure
Energy -12.9 kcal/mol
Model 156567646
Alignment
Sbjct: --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATATATATCAACCTCTTCAGCTTTTGT-TTGTCGAGTGTTGGATGTGGGGGGTCTTTTTTTTGCTGGTCTTCTTACAAAGTCAGCTCCCCTTAAATGTATTAGCAGAACAATTTGTGGATCTGTTCATTGGTGTGATAACTATCTACGCTATTGACGTGAAACA--------
       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...........((((((((..(((.(...).-)))..))).))))).(((((((((((....(...)..)))).))))))).....((.(((...(((((((....)))......)))).))).))..(((.(((((((((....))).)))))).))).........--------
Query: TGTCGCCTCTCCTTGTATTTTTAGGTCTATGTTTCTTCATATACCCCAATGTATGTTATAGAATGTAATAATATGGGCCTCTGTGCCTATAAACTTTGTACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATTA--ATATATCAACCTCTTCAGCTCTTTTGTTGTTGAGTGTTGGATGTGGGGGTTC--TCTTTTGCTGGTCTCTTCTTGAGATCGGCTCCCCTAAAATGCATTAGCGGAACAATTTGTTGACTCGTTCATTGGTGTGATAATTATCTACGCTATTGACGTGAAGCAAGATTCAG
       ..................................................................................................................................................................................................................................................................--.....((((((((..(((........)))..))).))))).((.(((((.((--..(...)..)).).)))).)).....((.((.....((((((....)))......)))...)).))..(((.(((((((((....))).)))))).))).................
 CBCs: ____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________(______________________________________)__________________________________________________
HCBCs: _____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________((_(_((____________________))_)_))______(___________(_(____)_)_______________)___________________________________________________
Transferred percentage of helices I: 91.667
II: 83.333
III: 83.333
IV: 100
Annotation Process: Blast (re)annotation
Start: 141
End: 566

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