Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 162423819

Figure

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Details

GI 162423819 see NCBI Nucleotide
Accession EU149839
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Metazoa Eumetazoa Cnidaria Anthozoa Hexacorallia Scleractinia Fungiina Fungiidae Heliofungia Heliofungia actiniformis 
Sequence CGCACCTAATCGTGCGGCCTTGAGGCGTCACGGCCCTTCTCGCGGCCGTGTCCCTTGAAAGTCAGCGAGACTCGCCGCGGCACGGGTTCGTTCCCTGCACGTTCGCGGAGGCTAAAAAACGCTTTTGCCCTTCGCGTGCACGGCAGCGGCCCGCCCGCCGAGTCGCGGAGGCGAACACTTTT
Structure (((((......)))))...((((((.(.(((((((.(....).)))))))).))))))..........((((((..((((...((((.(.(.((.(((((....(((((((.(.((((....))))).)))))))))))).)).)).).)))..)))))))))).....(..(((...))))
Method 3: Partial structure
Energy -50.2 kcal/mol
Model 52547230
Alignment
Sbjct: ----GGATATCATCCATCGCACGCGTTCGTGCGGCGTTGAGGCGTCACGGCCCTTCTTGCGGCCGTGTCCCTTGAAAGTCAGTGAGACTCGCCGCGGCAAGGGTTTGTTCCCTGCACACTCGCGGAGGCT-AAAAATGCTTTTGTCCTTCGCGTGCACGGGAGCAACCCGGTCGCCGAGTCACCGAGACGAACCATTCTTAAATCTTGA------
       ----............(((((((...).))))))..((((((.(.(((((((.(....).)))))))).))))))..........((((((..(((((..((((.(.((((.(((((....(((((((.(-((((....))))).)))))))))))).))))).).))).)))))))))))....((..(((...))))).........------
Query: TGTCGGATACCATCCAACGCACCTAATCGTGCGGCCTTGAGGCGTCACGGCCCTTCTCGCGGCCGTGTCCCTTGAAAGTCAGCGAGACTCGCCGCGGCACGGGTTCGTTCCCTGCACGTTCGCGGAGGCTAAAAAACGCTTTTGCCCTTCGCGTGCACGGCAGCGGCCCGCCCGCCGAGTCGCGGAGGCGAACACTTTTCGACTCTTGACCTCAG
       .................(((((......)))))...((((((.(.(((((((.(....).)))))))).))))))..........((((((..((((...((((.(.(.((.(((((....(((((((.(.((((....))))).)))))))))))).)).)).).)))..)))))))))).....(..(((...))))................
 CBCs: _______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ________________________________________________________________________________________________(______(_(________________________________________________________)_)______)_________________(_______)_________________
Transferred percentage of helices I: 71.429
II: 100
III: 94.595
IV: 80
Annotation Process: Blast (re)annotation
Start: 397
End: 611

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