Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 162423829

Figure

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Details

GI 162423829 see NCBI Nucleotide
Accession EU149849
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Metazoa Eumetazoa Cnidaria Anthozoa Hexacorallia Scleractinia Fungiina Fungiidae Pleuractis Pleuractis moluccensis 
Sequence CGCACATAGTCGTGCGGCGTTGAGGTGTCACGGCCCTTCTCGTGGCCGTGTCCCTTGAAAGTTAGCGAGACTCGCCGCGGCACGGGTTCGTTCCCTGCACACTCGCGGAGGCTAAAAACGCTTTTGCCCTTCGCGTGCACGGGAGCGGCCCGCCCGCCGAGTCGCGGAGGCGAACAATTTT
Structure ((((((...).)))))...((((((.(.(((((((.(....).)))))))).))))))..........((((((..((((...((((.(.((((.(((((....(((((((.(((((....))))).)))))))))))).))))).).)))..))))))))))....((...((...))))
Method 3: Partial structure
Energy -54.2 kcal/mol
Model 52547228
Alignment
Sbjct: ----GGATATCATCCATCGCACGCGTTCGTGCGGCGTTGAGGCGTCACGGCCCTTCTTGCGGCCGTGTCCCTTGAAAGTCAGTGAGACTCGCCGCGGCAAGGGTTTGTTCCCTGCACACTCGCGGAGGCTAAAAATGCTTTTGTCCTTCGCGTGCACGGGAGCAACCCGGTCGCCGAGTCACCGAGGCGAACCATTCTTAAATCTTGA------
       ----............(((((((...).))))))..((((((.(.(((((((.(....).)))))))).))))))..........((((((..(((((..((((.(.((((.(((((....(((((((.(((((....))))).)))))))))))).))))).).))).)))))))))))....(((..((...))))).........------
Query: TGTCGGATATCATCCAACGCACATAGTCGTGCGGCGTTGAGGTGTCACGGCCCTTCTCGTGGCCGTGTCCCTTGAAAGTTAGCGAGACTCGCCGCGGCACGGGTTCGTTCCCTGCACACTCGCGGAGGCTAAAAACGCTTTTGCCCTTCGCGTGCACGGGAGCGGCCCGCCCGCCGAGTCGCGGAGGCGAACAATT-TTATTTCTTGACCTCAG
       .................((((((...).)))))...((((((.(.(((((((.(....).)))))))).))))))..........((((((..((((...((((.(.((((.(((((....(((((((.(((((....))))).)))))))))))).))))).).)))..))))))))))....((...((...))-))...............
 CBCs: ______________________________________________________________________________________________________________________________________________________________________________________________________________________
HCBCs: ______________________(___)_____________________________________________________________________(______(_(_______________________________________________________)_)______)___________________________________________
Transferred percentage of helices I: 85.714
II: 100
III: 97.297
IV: 80
Annotation Process: Blast (re)annotation
Start: 389
End: 601

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