Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 292453729

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 292453729 see NCBI Nucleotide
Accession GU721865
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; environmental samples ; uncultured fungus 
Sequence GTGAACTCCTCCACCCTCCACCTTTTTCGAAGGGTGTTGGGCTGGGATTTGGGAGCATGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATGCATTAGCGAAGCCCTTTGCGGCCTTGGTGTGATAATCATCTACGCCTCGGTTTAGCGAACCTTACGGGAATCGCTTACAGCCGTCTCGCAAGAGACAACGACTACCAACTTGA
Structure .........(((((((..(((((((....)))))))..))).)))).((.(((((...(((((((.......))))))).))))).))..((...(((((..((((((((((((..((((((((....))).)))))..))))..)))))......)))..)))))....)).(((((....))))).................
Method 1: RNAfold - direct fold
Energy -68.3 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
292453054 (Method 2) see NCBI Nucleotide
292453070 (Method 2) see NCBI Nucleotide
292453100 (Method 2) see NCBI Nucleotide
292453116 (Method 2) see NCBI Nucleotide
292453418 (Method 2) see NCBI Nucleotide
299767623 (Method 2) see NCBI Nucleotide
300078001 (Method 2) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Corticiales see NCBI Taxonomy
Corticiaceae see NCBI Taxonomy
Dendrophora see NCBI Taxonomy
Dendrophora albobadia see NCBI Taxonomy
4539781 (Method 2) see NCBI Nucleotide
Entomocorticium see NCBI Taxonomy
Entomocorticium sp. B see NCBI Taxonomy
4539767 (Method 2) see NCBI Nucleotide
Entomocorticium sp. H see NCBI Taxonomy
4539771 (Method 2) see NCBI Nucleotide
Metulodontia see NCBI Taxonomy
Metulodontia nivea see NCBI Taxonomy
30840884 (Method 2) see NCBI Nucleotide
Russulales see NCBI Taxonomy
Gloeocystidiellaceae see NCBI Taxonomy
Gloeocystidiellum see NCBI Taxonomy
Gloeocystidiellum sp. NH13258 see NCBI Taxonomy
16564966 (Method 2) see NCBI Nucleotide
Gloeocystidiellum sp. NN985128 see NCBI Taxonomy
22034624 (Method 2) see NCBI Nucleotide
Peniophoraceae see NCBI Taxonomy
Peniophora see NCBI Taxonomy
Peniophora aurantiaca see NCBI Taxonomy
6563326 (Method 2) see NCBI Nucleotide
Peniophora cinerea see NCBI Taxonomy
223366131 (Method 2) see NCBI Nucleotide
Peniophora incarnata see NCBI Taxonomy
30840886 (Method 2) see NCBI Nucleotide
Peniophora rufa see NCBI Taxonomy
4539775 (Method 2) see NCBI Nucleotide
Peniophora pseudo-pini see NCBI Taxonomy
4539773 (Method 2) see NCBI Nucleotide
Peniophora sp. UFMGCB 1849 see NCBI Taxonomy
312146919 (Method 2) see NCBI Nucleotide
Agaricomycetidae see NCBI Taxonomy
Agaricales see NCBI Taxonomy
Lyophyllaceae see NCBI Taxonomy
Termitomyces see NCBI Taxonomy
Termitomyces sp. OE 147 see NCBI Taxonomy
310723122 (Method 2) see NCBI Nucleotide
unclassified Basidiomycota see NCBI Taxonomy
basidiomycete sp. OS-S71 see NCBI Taxonomy
78644061 (Method 2) see NCBI Nucleotide
environmental samples see NCBI Taxonomy
uncultured Basidiomycota see NCBI Taxonomy
63408278 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 419
End: 622

If you use the database please cite.