Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 11120122

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 11120122 see NCBI Nucleotide
Accession AF287681
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; fabids ; Fabales ; Fabaceae ; Papilionoideae ; Crotalarieae ; Aspalathus ; Aspalathus cordata 
Sequence GCCCATCGTTGCCCCAGTGCCCTGGCCTTGCGCTAGGCACCGAGCGGGGCGAGTGCTGGCTTCCCGTGAGCAACGCCTCGCGGTTGGTTGAAATATGAGTCCGTGGTGGAGGGCGCCGTGATGGATGGTGGTTGAGTAAAAGCTCGAGACCGATCGTGCGTGTCACCCCCACCGGCTTTGCGACTCTACGGCCCATGAGCGTCTTTTGGTCGCCCAAGACGG
Structure .....(((.((((..(((((.........))))).)))).)))((((((((..((((.((.....)).)))).)))))))).((.(((((......(((((((.(((((.(((.((((((..((.((((..((((((....)))))).)))).)).)))).))..)))))))).....)).)))))..))))).))...(((((..(((....)))))))).
Method 1: RNAfold - direct fold
Energy -77.6 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Fabales see NCBI Taxonomy
Fabaceae see NCBI Taxonomy
Papilionoideae see NCBI Taxonomy
Crotalarieae see NCBI Taxonomy
Crotalaria see NCBI Taxonomy
Crotalaria capensis see NCBI Taxonomy
2230779 (Method 2) see NCBI Nucleotide
Aspalathus see NCBI Taxonomy
Aspalathus bracteata see NCBI Taxonomy
152003629 (Method 2) see NCBI Nucleotide
152003630 (Method 2) see NCBI Nucleotide
Genisteae see NCBI Taxonomy
Cytisus see NCBI Taxonomy
Cytisus multiflorus see NCBI Taxonomy
25070785 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 401
End: 622

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