Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 122831065

Figure

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Details

GI 122831065 see NCBI Nucleotide
Accession EF188277
Date 2011/04/01
Lineage see NCBI Taxonomy root cellular organisms Eukaryota Fungi/Metazoa group Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricomycetes incertae sedis Polyporales Ganodermataceae Ganoderma Ganoderma lucidum 
Sequence ATGAAATCTTCAACCTACAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTATCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTCTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTTATAAGACAGCTTTATGACCTCTGA
Structure ........(((((((((((((((.....)))))))))).)))))...(((((...((((((((....)))))))).)))))..........((((((...((.(((....(((.((.(((((((((...))).)))))).)))))....)))...)))))))).......((((....)))).................
Method 1: RNAfold - direct fold
Energy -61 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
environmental samples see NCBI Taxonomy
uncultured fungus see NCBI Taxonomy
28269283 (Method 2) see NCBI Nucleotide
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma microsporum see NCBI Taxonomy
474135 (Method 2) see NCBI Nucleotide
Agaricomycetidae see NCBI Taxonomy
Boletales see NCBI Taxonomy
Boletineae see NCBI Taxonomy
Boletaceae see NCBI Taxonomy
Boletus see NCBI Taxonomy
Boletus speciosus see NCBI Taxonomy
322366641 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 346
End: 544

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