Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 146760798

Figure

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Details

GI 146760798 see NCBI Nucleotide
Accession EF570872
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; mitosporic Glomerellaceae ; Colletotrichum ; Colletotrichum orbiculare 
Sequence ATTTCAACCCTCAAGCACCGCTTGGCGTTGGGGCTTCCACGGCTGACGTGGGCCCTCAAAGACAGTGGCGGACCCTCGCGGAGCCTCCTTTGCGTAGTAACATACCACCTCGCACCGGGACCCGCAGGGCACTCCTGCCGTAAAACCCCCCAATTTTTACAAGGTC
Structure ....((((..((((((...)))))).))))((((..(((((.....)))))))))...........((((((((((.((((....((((.((((..((........))..))))..)))).))))))))...))).)))((((((.........))))))......
Method 1: RNAfold - direct fold
Energy -48.6 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Ascomycota see NCBI Taxonomy
saccharomyceta see NCBI Taxonomy
Pezizomycotina see NCBI Taxonomy
leotiomyceta see NCBI Taxonomy
sordariomyceta see NCBI Taxonomy
Sordariomycetes see NCBI Taxonomy
Hypocreomycetidae see NCBI Taxonomy
Hypocreomycetidae incertae sedis see NCBI Taxonomy
Glomerellaceae see NCBI Taxonomy
Glomerella see NCBI Taxonomy
Glomerella lindemuthiana see NCBI Taxonomy
284807375 (Method 2) see NCBI Nucleotide
mitosporic Glomerellaceae see NCBI Taxonomy
Colletotrichum see NCBI Taxonomy
Colletotrichum boninense see NCBI Taxonomy
21038946 (Method 2) see NCBI Nucleotide
21038949 (Method 2) see NCBI Nucleotide
21038952 (Method 2) see NCBI Nucleotide
Colletotrichum sp. Tm3-2 see NCBI Taxonomy
38427153 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 347
End: 512

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