Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 150035450

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 150035450 see NCBI Nucleotide
Accession EF619667
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Sordariomycetes incertae sedis ; Phyllachorales ; Phyllachoraceae ; environmental samples ; uncultured Phyllachoraceae 
Sequence ATTTCAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGGTTAAACGTAGGCCCTTAAAGGTAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACTAACGTCTCGCACTGGGATTCGGAGGGATTCTAGCCGTAAAACCCCCAATTTTTTAAGGTTGA
Structure ....((((..((((((...)))))).))))(((((.((((......))))))))).....(((..((((((((((((.((((...((((.((((..((.....))....))))..)))))))))))))..))).))))....)))..((((((....)))))).
Method 1: RNAfold - direct fold
Energy -51.6 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Ascomycota see NCBI Taxonomy
saccharomyceta see NCBI Taxonomy
Pezizomycotina see NCBI Taxonomy
leotiomyceta see NCBI Taxonomy
sordariomyceta see NCBI Taxonomy
Sordariomycetes see NCBI Taxonomy
Hypocreomycetidae see NCBI Taxonomy
Hypocreomycetidae incertae sedis see NCBI Taxonomy
Glomerellaceae see NCBI Taxonomy
Glomerella see NCBI Taxonomy
Glomerella cingulata see NCBI Taxonomy
117557293 (Method 2) see NCBI Nucleotide
117557299 (Method 2) see NCBI Nucleotide
Colletotrichum gloeosporioides see NCBI Taxonomy
Glomerella acutata see NCBI Taxonomy
215401012 (Method 2) see NCBI Nucleotide
215401013 (Method 2) see NCBI Nucleotide
Glomerella lindemuthiana see NCBI Taxonomy
2594 (Method 2) see NCBI Nucleotide
Glomerella sp. MP3 see NCBI Taxonomy
194459591 (Method 2) see NCBI Nucleotide
mitosporic Glomerellaceae see NCBI Taxonomy
Colletotrichum see NCBI Taxonomy
Colletotrichum fuscum see NCBI Taxonomy
166797301 (Method 2) see NCBI Nucleotide
Colletotrichum coccodes see NCBI Taxonomy
17426685 (Method 2) see NCBI Nucleotide
Colletotrichum destructivum see NCBI Taxonomy
34787280 (Method 2) see NCBI Nucleotide
34787281 (Method 2) see NCBI Nucleotide
Colletotrichum kahawae see NCBI Taxonomy
159031600 (Method 2) see NCBI Nucleotide
Colletotrichum sp. MAFF 238561 see NCBI Taxonomy
154090872 (Method 2) see NCBI Nucleotide
Colletotrichum sp. MAFF 410045 see NCBI Taxonomy
154090871 (Method 2) see NCBI Nucleotide
Colletotrichum phormii see NCBI Taxonomy
82799392 (Method 2) see NCBI Nucleotide
82799398 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 331
End: 494

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