Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 157704069

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 157704069 see NCBI Nucleotide
Accession EU021460
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Polyporales ; Ganodermataceae ; Ganoderma ; Ganoderma lucidum 
Sequence ATGAAATCTTCAACCTGCAAGCTTTTGTGGTTTGTAGGCTTGGACTTGGAGGCTTGTCGGCCGTTCTCGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTCTCAGTGTGATAATGTCTACGCTGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCAGTTGGAGACAACTTTATGACCTCTGA
Structure ........(((((((((((((((.....)))))))))).)))))...(((((...((((((((....)))))))).)))))..........((((((...((.(((....(((.((.(((((((((...))).)))))).)))))....)))...)))))))).......(((..(((((....)))))....)))......
Method 1: RNAfold - direct fold
Energy -64.4 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Polyporales see NCBI Taxonomy
Ganodermataceae see NCBI Taxonomy
Ganoderma see NCBI Taxonomy
Ganoderma lucidum see NCBI Taxonomy
157704071 (Method 2) see NCBI Nucleotide
240003290 (Method 2) see NCBI Nucleotide
291586613 (Method 2) see NCBI Nucleotide
296427673 (Method 2) see NCBI Nucleotide
296427674 (Method 2) see NCBI Nucleotide
296427675 (Method 2) see NCBI Nucleotide
296427676 (Method 2) see NCBI Nucleotide
296427681 (Method 2) see NCBI Nucleotide
296427682 (Method 2) see NCBI Nucleotide
296427686 (Method 2) see NCBI Nucleotide
296427687 (Method 2) see NCBI Nucleotide
296427688 (Method 2) see NCBI Nucleotide
296427689 (Method 2) see NCBI Nucleotide
315272108 (Method 2) see NCBI Nucleotide
315272115 (Method 2) see NCBI Nucleotide
Ganoderma tropicum see NCBI Taxonomy
538018 (Method 2) see NCBI Nucleotide
538019 (Method 2) see NCBI Nucleotide
Ganoderma sp. E7108 see NCBI Taxonomy
317416287 (Method 2) see NCBI Nucleotide
317416292 (Method 2) see NCBI Nucleotide
Ganoderma sp. E7376 see NCBI Taxonomy
317416277 (Method 2) see NCBI Nucleotide
Ganoderma philippii see NCBI Taxonomy
57282650 (Method 2) see NCBI Nucleotide
317416377 (Method 2) see NCBI Nucleotide
Ganoderma sp. OE-239 see NCBI Taxonomy
49357493 (Method 2) see NCBI Nucleotide
Ganoderma sp. E7096 see NCBI Taxonomy
57282648 (Method 2) see NCBI Nucleotide
Ganoderma aff. steyaertanum C17274 see NCBI Taxonomy
165941432 (Method 2) see NCBI Nucleotide
Ganoderma pseudoferreum see NCBI Taxonomy
210076556 (Method 2) see NCBI Nucleotide
210077544 (Method 2) see NCBI Nucleotide
212658099 (Method 2) see NCBI Nucleotide
212658100 (Method 2) see NCBI Nucleotide
212658101 (Method 2) see NCBI Nucleotide
212658102 (Method 2) see NCBI Nucleotide
212658103 (Method 2) see NCBI Nucleotide
212658104 (Method 2) see NCBI Nucleotide
212658105 (Method 2) see NCBI Nucleotide
Russulales see NCBI Taxonomy
Russulaceae see NCBI Taxonomy
Lactarius see NCBI Taxonomy
Lactarius chamaeleontinus see NCBI Taxonomy
52000915 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 386
End: 587

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