Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 17426647

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 17426647 see NCBI Nucleotide
Accession AJ301943
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Ascomycota ; saccharomyceta ; Pezizomycotina ; leotiomyceta ; sordariomyceta ; Sordariomycetes ; Hypocreomycetidae ; Hypocreomycetidae incertae sedis ; Glomerellaceae ; mitosporic Glomerellaceae ; Colletotrichum ; Colletotrichum truncatum 
Sequence CAACCCTCAAGCTCTGCTTGGTGTTGGGGCCCTACGTCTGACGTAGGCCCTCAAAGACAGTGGCGGACCCTCTCGGAGCCTCCTTTGCGTAGTAACTAACGTCTCGCACTGGGATTCGGAGGGACTCTTGCCGTAAAACCCCCAATTTTTACAG
Structure ......((((((...))))))..((((((.(((((((...))))))).)))))).......(((((.(((((.((((...((((.((((..((.....))....))))..)))))))))))))....)))))((((((........))))))..
Method 1: RNAfold - direct fold
Energy -50 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Ascomycota see NCBI Taxonomy
saccharomyceta see NCBI Taxonomy
Pezizomycotina see NCBI Taxonomy
leotiomyceta see NCBI Taxonomy
sordariomyceta see NCBI Taxonomy
Sordariomycetes see NCBI Taxonomy
unclassified Sordariomycetes see NCBI Taxonomy
sordariomycete sp. agrAP4244 see NCBI Taxonomy
219921520 (Method 2) see NCBI Nucleotide
Hypocreomycetidae see NCBI Taxonomy
Hypocreomycetidae incertae sedis see NCBI Taxonomy
Glomerellaceae see NCBI Taxonomy
Glomerella see NCBI Taxonomy
Glomerella cingulata see NCBI Taxonomy
18141001 (Method 2) see NCBI Nucleotide
18141011 (Method 2) see NCBI Nucleotide
27657331 (Method 2) see NCBI Nucleotide
27657332 (Method 2) see NCBI Nucleotide
27657333 (Method 2) see NCBI Nucleotide
27657336 (Method 2) see NCBI Nucleotide
37695564 (Method 2) see NCBI Nucleotide
37695566 (Method 2) see NCBI Nucleotide
37695567 (Method 2) see NCBI Nucleotide
37695568 (Method 2) see NCBI Nucleotide
37732210 (Method 2) see NCBI Nucleotide
62199653 (Method 2) see NCBI Nucleotide
62903132 (Method 2) see NCBI Nucleotide
62903133 (Method 2) see NCBI Nucleotide
62903143 (Method 2) see NCBI Nucleotide
113715583 (Method 2) see NCBI Nucleotide
113715584 (Method 2) see NCBI Nucleotide
157072717 (Method 2) see NCBI Nucleotide
166798309 (Method 2) see NCBI Nucleotide
167859889 (Method 2) see NCBI Nucleotide
167859891 (Method 2) see NCBI Nucleotide
167859892 (Method 2) see NCBI Nucleotide
226348221 (Method 2) see NCBI Nucleotide
Colletotrichum gloeosporioides see NCBI Taxonomy
Glomerella acutata see NCBI Taxonomy
18140922 (Method 2) see NCBI Nucleotide
18141002 (Method 2) see NCBI Nucleotide
19909116 (Method 2) see NCBI Nucleotide
27657306 (Method 2) see NCBI Nucleotide
27657307 (Method 2) see NCBI Nucleotide
27657308 (Method 2) see NCBI Nucleotide
27657309 (Method 2) see NCBI Nucleotide
27657310 (Method 2) see NCBI Nucleotide
27657311 (Method 2) see NCBI Nucleotide
27657312 (Method 2) see NCBI Nucleotide
27657314 (Method 2) see NCBI Nucleotide
27657315 (Method 2) see NCBI Nucleotide
190349628 (Method 2) see NCBI Nucleotide
190349629 (Method 2) see NCBI Nucleotide
mitosporic Glomerellaceae see NCBI Taxonomy
Colletotrichum see NCBI Taxonomy
Colletotrichum musae see NCBI Taxonomy
62903138 (Method 2) see NCBI Nucleotide
Colletotrichum fragariae see NCBI Taxonomy
18141004 (Method 2) see NCBI Nucleotide
18141008 (Method 2) see NCBI Nucleotide
27657328 (Method 2) see NCBI Nucleotide
27657329 (Method 2) see NCBI Nucleotide
27657330 (Method 2) see NCBI Nucleotide
113715581 (Method 2) see NCBI Nucleotide
113715582 (Method 2) see NCBI Nucleotide
166798310 (Method 2) see NCBI Nucleotide
166798311 (Method 2) see NCBI Nucleotide
166798312 (Method 2) see NCBI Nucleotide
Colletotrichum kahawae see NCBI Taxonomy
27657335 (Method 2) see NCBI Nucleotide
Colletotrichum sp. Tm6-1 see NCBI Taxonomy
37695569 (Method 2) see NCBI Nucleotide
Colletotrichum sp. MUCL 41702 see NCBI Taxonomy
190609820 (Method 2) see NCBI Nucleotide
Colletotrichum verruculosum see NCBI Taxonomy
284807381 (Method 2) see NCBI Nucleotide
Annotation Process: Genbank annotation
Start: 976
End: 1129

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