Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 4539776

Figure

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Details

GI 4539776 see NCBI Nucleotide
Accession AF119517
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Russulales ; Peniophoraceae ; Peniophora ; Peniophora aurantiaca 
Sequence GTGAACTCTTCCACCCTCTACCTTTTTCGAAAGGCATTGGGCTGGGATTTGGGAGTTGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATACATTAGCGAAGCCCTTTGCGGCCTTGGTGTGATAGTCATCTACGCCTCGGCTTAGCGAATCAATGGGGAATTGCTTCCAACCGTCTCGCAAGAGACAACGACTTAAC
Structure ........((((((((....(((((....)))))....))).)))))...(((((..(((((((.......))))))).)))))..........(((((..((((((((((((..((((((((....))).)))))..))))..))))......))))..))))).......(((((....)))))...........
Method 1: RNAfold - direct fold
Energy -66.1 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetes incertae sedis see NCBI Taxonomy
Thelephorales see NCBI Taxonomy
Typhulaceae see NCBI Taxonomy
Typhula see NCBI Taxonomy
Typhula ishikariensis see NCBI Taxonomy
6467843 (Method 2) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 353
End: 549

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