Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 4539779

Figure

(Save as SVG or PNG) view with Pseudoviewer

Details

GI 4539779 see NCBI Nucleotide
Accession AF119520
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Fungi/Metazoa group ; Fungi ; Dikarya ; Basidiomycota ; Agaricomycotina ; Agaricomycetes ; Agaricomycetes incertae sedis ; Russulales ; Peniophoraceae ; Peniophora ; Peniophora pithya 
Sequence GTGAACTCCTCCACCCTCTATCTTTTTCGGAAGGCATTGGGCTGGGATTTGGGAGCTTGCGGGTCCCTGGCCGATCCGCTCTCCTTGAATACATTAGTGAAGCCCTTGCGGCCTTGGTGTGATAGTCATCTACGCCTCGGCTTAGCGAACATACGGGGACTCGCTTCCAACCGTCTCGCAAGAGACAATCACTTCAAC
Structure .........(((((((....(((((....)))))....))).)))).((.(((((...(((((((.......))))))).))))).)).......(((((..(((((((((((..((((((((....))).)))))..))))..))).......))))..))))).......(((((....)))))............
Method 1: RNAfold - direct fold
Energy -62.3 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Fungi/Metazoa group see NCBI Taxonomy
Fungi see NCBI Taxonomy
Dikarya see NCBI Taxonomy
Basidiomycota see NCBI Taxonomy
Agaricomycotina see NCBI Taxonomy
Agaricomycetes see NCBI Taxonomy
Agaricomycetidae see NCBI Taxonomy
Agaricales see NCBI Taxonomy
Marasmiaceae see NCBI Taxonomy
Marasmius see NCBI Taxonomy
Marasmius adhaesus see NCBI Taxonomy
239775331 (Method 2) see NCBI Nucleotide
Annotation Process: Mixed HMM and Genbank annotation
Start: 349
End: 546

If you use the database please cite.