Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

GI 21157

Figure

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Details

GI 21157 see NCBI Nucleotide
Accession X66325
Date 2011/04/01
Lineage see NCBI Taxonomy root ; cellular organisms ; Eukaryota ; Viridiplantae ; Streptophyta ; Streptophytina ; Embryophyta ; Tracheophyta ; Euphyllophyta ; Spermatophyta ; Magnoliophyta ; eudicotyledons ; core eudicotyledons ; rosids ; malvids ; Brassicales ; Brassicaceae ; Brassiceae ; Sinapis ; Sinapis alba 
Sequence ACAAATCGTCGTCCCCCCATCCTCTCGAGGATATGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCGAGCTAAGGACGTTTTGGAGCGTCTCGACATGCGGTGGTGAATTGTAACCTCGTCATATTGTCGGTCGTTCCGGTTCAAAAGCTCTTGATGACCCAAAGTCCTCAACGCGA
Structure ........(((((((...(((((....)))))..)))))))....(((((..((((((((....))))))))..)))))......(((((...((....((((((((..((((((.((((.(((........))))))).....)))))).)))))))).))...))))).(((.(((.....))).)))......
Method 1: RNAfold - direct fold
Energy -67.5 kcal/mol
Model for
root see NCBI Taxonomy
cellular organisms see NCBI Taxonomy
Eukaryota see NCBI Taxonomy
Viridiplantae see NCBI Taxonomy
Streptophyta see NCBI Taxonomy
Streptophytina see NCBI Taxonomy
Embryophyta see NCBI Taxonomy
Tracheophyta see NCBI Taxonomy
Euphyllophyta see NCBI Taxonomy
Spermatophyta see NCBI Taxonomy
Magnoliophyta see NCBI Taxonomy
eudicotyledons see NCBI Taxonomy
core eudicotyledons see NCBI Taxonomy
rosids see NCBI Taxonomy
fabids see NCBI Taxonomy
Zygophyllales see NCBI Taxonomy
Krameriaceae see NCBI Taxonomy
Krameria see NCBI Taxonomy
Krameria secundiflora see NCBI Taxonomy
30171987 (Method 2) see NCBI Nucleotide
Annotation Process: HMM annotation
Start: 2523
End: 2718

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