Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
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ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

Citation

Database

  • Koetschan C., Förster F., Keller A., Schleicher T., Ruderisch B., Schwarz R., Müller T., Wolf M., Schultz J. (2010):
    The ITS2 Database III - sequences and structures for phylogeny
    Nucleic Acids Research 38:D275-9
  • Selig, C., Wolf, M., Müller, T., Dandekar, T. and Schultz, J. (2008):
    The ITS2 Database II: homology modelling RNA structure for molecular systematics
    Nucleic Acids Research 36:D377-380
  • Schultz, J., Müller, T., Achtziger, M., Seibel, P.N., Dandekar, T., Wolf, M. (2006):
    The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses.
    Nucleic Acids Research 34:W704-707.

Conserved core of secondary structure

  • Schultz, J., Maisel, S., Gerlach, D., Müller, T., Wolf, M. (2005):
    A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota.
    RNA 11:361-364.

Homology modelling

  • Wolf, M., Achtziger, M., Schultz, J., Dandekar, T., Müller, T. (2005):
    Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures.
    RNA 11:1616-1623.

ITS2 Annotation

  • Keller, A., Schleicher, T., Schultz, J., Müller, T., Dandekar, T. and Wolf, M. (2009):
    5.8S-28S rRNA interaction and HMM-based ITS2 annotation
    Gene 430:50-57.

Review article

  • Schultz, J., Wolf, M. (2009):
    ITS2 Sequence-Structure Analysis in Phylogenetics: A How-to Manual for Molecular Systematics
    Molecular Phylogenetics and Evolution 52(2):520-3.

ITS2 Group Publications

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If you use the database please cite.