Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
 		   
Predict
 		   
Model
 		   
Annotate
 		   
Motif
 		   
Tools
 		 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications
ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)

Chlorophyta hypertree
(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

Search results (5 hits, page 1)

Show entries per page

Lineage of Amauroderma: root; cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Ganodermataceae; Amauroderma;
Select All
>474100 see NCBI Nucleotide Amauroderma rude var. intermedium Method 1 (see details)
AATCTTCAACCTAAAAGCCTTTGCGGGTTTGTTAGGCTTGGACTTGGAGGCTTGTCGGCTCATTAGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAATTGTCAACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCGTTAGAGACAGATTAT
....((((((((((((((((....)))))).))))).)))))...(((((...(((((((....))))))).)))))..........((((((...((.(((....(((.((.(((((((((....))).)))))))).)))....)))...)))))))).......(((((....))))).......
>298354100 see NCBI Nucleotide Amauroderma rugosum Method 2 (see details)
ATGAAATCTTCAACCTAAAAGCCTTTGCGGGTTTGTTAGGATTGGACTTGGAGGCTTGTCGGCTCATGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTGCGGATCGGCTGTCGGTGTGATAATTGTCAACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCTAACCGTCTCGTTAGAGACAGATTATTGACCTCTGA
........((((((((((((((((....)))))).))))).)))))...(((((...(((((((....))))))).))))).......(..((((((...((.(((...((((.((.(((((((((....))).)))))))).))).)..)))...))))))))..)....(((((....))))).................
>317416294 see NCBI Nucleotide Amauroderma subrugosum Method 2 (see details)
ATTTCAACCCTCGAGCGCCCCCGGGTGCCCGGCGTTGGGGGACGGCACCGCCCTCGCAGCGGTCCCGCCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTGAAAGCAAACTCGCACCGGAGCGCGGCGCGGCCACGCCGTGAAACCCCCCAAGCAACACGAAATGTTGGCCT
..........(((.(((((....))))).)))..(((((((.(((((((((..(...))))))...)))))))))))..(((.((((((....((((((.((.(((..((((.(((.((....))..)))))))..))))))))))))).))))...))).......(..(((.....(...)))))....
>317416295 see NCBI Nucleotide Amauroderma subrugosum Method 2 (see details)
ATTTCAACCCTCGAGCGCCCCCGGGTGCCCGGCGTTGGGGGACGGCACCGCCCTCGCAGCGGTCCCGCCGCCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTGAAAGCAAACTCGCACCGGAGCGCGGCGCGGCCACGCCGTGAAACCCCCCAAGCAACACGAAATGTTGGCCT
..........(((.(((((....))))).)))..(((((((.(((((((((..(...))))))...)))))))))))..(((.((((((....((((((.((.(((..((((.(((.((....))..)))))))..))))))))))))).))))...))).......(..(((.....(...)))))....
>57282815 see NCBI Nucleotide Amauroderma subresinosum Method 2 (see details)
ATGAAATCTTCAATCTACAAACCTTTGCGGGTTTTGCAGATTTGGATTTGGAGGCTTGTCGGCCTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTTACGGTGTGATAATTGTCTACGCCGCGACCGTGAAGCGTTTGGCGAGCTTCCTAATCGTCTCGTTGGAGACATCTTATTGACCTCTGA
.........(((((((.((((.(((...))).)))).))).)))).((.(((((...((((((...)))))).))))).))....(((((.((.(((...(((...((((.((.(((((((((....))).)))))).))))).)..)))...))).))....))))).(((..(.((((....))).)).)))......
Select All

Show entries per page

Used methods

Id Description*
1 Unafold - Direct
2 Homology modeled
3 Partial structure
*These structures have been modeled as accurately as possible, but represent only template based predictions and thus may be not as accurate as experimentally verified RNA structures

If you use the database please cite.