Koetschan et al. (2010) NAR 38:D275-9
Selig et al. (2008) NAR 36:D377-380.
Schultz et al. (2006) NAR 34:W704-7.
Select a database version:
 
     
Browse
   
Predict
   
Model
   
Annotate
   
Motif
   
Tools
 
About
Flowchart
What's new
Citation
Cited by > 150
Press releases
Statistics
Updates
Supplements
Links
ITS2 in PubMed
ITS2 highlights
Staff
Funding
Acknowledgements
ITS2 group
publications

ITS2 of the month
Awards
Usage policy
Fun



ITS2 3D structure
(Keller et al. 2010)


Chlorophyta hypertree

(Buchheim et al. 2011)
Fig1, Fig2, Fig3, Fig4

Database statistics

Sequence and structure statistics

Total number of annotated ITS2 features with structure: 288044

Sequence statistics

by annotation discovery method
Method Count
HMM annotation 142599
Mixed HMM and Genbank annotation 51220
Genbank annotation 24577
Blast (re)annotation 69648
Total 288044

Structure statistics

by structure discovery method
Iteration Description min length avg length max length Count
Direct fold 71 197.91 513 99146
1 Homology modeling 1 124 217.46 1101 107209
2 Homology modeling 2 121 249.74 1495 5211
3 Homology modeling 3 124 286.54 729 1260
4 Homology modeling 4 124 241.15 531 266
5 Homology modeling 5 130 220.70 455 63
6 Homology modeling 6 163 224.97 250 71
7 Homology modeling 7 206 222.78 249 115
8 Homology modeling 8 223 242.50 253 22
9 Homology modeling 9 250 250.00 250 1
  Partial homology modeling 65 269.11 1965 74680
Total 288044

Structure lengths

Helix lengths

Helix transfer percentages

If you use the database please cite.